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Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network

Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in t...

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Detalles Bibliográficos
Autores principales: Axelrod, Kevin, Sanchez, Alvaro, Gore, Jeff
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547091/
https://www.ncbi.nlm.nih.gov/pubmed/26302311
http://dx.doi.org/10.7554/eLife.07935
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author Axelrod, Kevin
Sanchez, Alvaro
Gore, Jeff
author_facet Axelrod, Kevin
Sanchez, Alvaro
Gore, Jeff
author_sort Axelrod, Kevin
collection PubMed
description Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in the face of environmental fluctuations remains an open question. Here, we use environmental perturbations to characterize the resilience of phenotypic states in a synthetic gene network near a critical transition. We find that far from the critical transition an environmental perturbation may induce little to no phenotypic switching, whereas close to the critical transition the same perturbation can cause many cells to switch phenotypic states. This loss of resilience was observed for perturbations that interact directly with the gene circuit as well as for a variety of generic perturbations-such as salt, ethanol, or temperature shocks-that alter the state of the cell more broadly. We obtain qualitatively similar findings in natural gene circuits, such as the yeast GAL network. Our findings illustrate how phenotypic memory can become destabilized by environmental variability near a critical transition. DOI: http://dx.doi.org/10.7554/eLife.07935.001
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spelling pubmed-45470912015-08-25 Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network Axelrod, Kevin Sanchez, Alvaro Gore, Jeff eLife Computational and Systems Biology Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in the face of environmental fluctuations remains an open question. Here, we use environmental perturbations to characterize the resilience of phenotypic states in a synthetic gene network near a critical transition. We find that far from the critical transition an environmental perturbation may induce little to no phenotypic switching, whereas close to the critical transition the same perturbation can cause many cells to switch phenotypic states. This loss of resilience was observed for perturbations that interact directly with the gene circuit as well as for a variety of generic perturbations-such as salt, ethanol, or temperature shocks-that alter the state of the cell more broadly. We obtain qualitatively similar findings in natural gene circuits, such as the yeast GAL network. Our findings illustrate how phenotypic memory can become destabilized by environmental variability near a critical transition. DOI: http://dx.doi.org/10.7554/eLife.07935.001 eLife Sciences Publications, Ltd 2015-08-24 /pmc/articles/PMC4547091/ /pubmed/26302311 http://dx.doi.org/10.7554/eLife.07935 Text en © 2015, Axelrod et al http://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Axelrod, Kevin
Sanchez, Alvaro
Gore, Jeff
Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title_full Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title_fullStr Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title_full_unstemmed Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title_short Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
title_sort phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547091/
https://www.ncbi.nlm.nih.gov/pubmed/26302311
http://dx.doi.org/10.7554/eLife.07935
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AT gorejeff phenotypicstatesbecomeincreasinglysensitivetoperturbationsnearabifurcationinasyntheticgenenetwork