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Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network
Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in t...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547091/ https://www.ncbi.nlm.nih.gov/pubmed/26302311 http://dx.doi.org/10.7554/eLife.07935 |
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author | Axelrod, Kevin Sanchez, Alvaro Gore, Jeff |
author_facet | Axelrod, Kevin Sanchez, Alvaro Gore, Jeff |
author_sort | Axelrod, Kevin |
collection | PubMed |
description | Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in the face of environmental fluctuations remains an open question. Here, we use environmental perturbations to characterize the resilience of phenotypic states in a synthetic gene network near a critical transition. We find that far from the critical transition an environmental perturbation may induce little to no phenotypic switching, whereas close to the critical transition the same perturbation can cause many cells to switch phenotypic states. This loss of resilience was observed for perturbations that interact directly with the gene circuit as well as for a variety of generic perturbations-such as salt, ethanol, or temperature shocks-that alter the state of the cell more broadly. We obtain qualitatively similar findings in natural gene circuits, such as the yeast GAL network. Our findings illustrate how phenotypic memory can become destabilized by environmental variability near a critical transition. DOI: http://dx.doi.org/10.7554/eLife.07935.001 |
format | Online Article Text |
id | pubmed-4547091 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-45470912015-08-25 Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network Axelrod, Kevin Sanchez, Alvaro Gore, Jeff eLife Computational and Systems Biology Microorganisms often exhibit a history-dependent phenotypic response after exposure to a stimulus which can be imperative for proper function. However, cells frequently experience unexpected environmental perturbations that might induce phenotypic switching. How cells maintain phenotypic states in the face of environmental fluctuations remains an open question. Here, we use environmental perturbations to characterize the resilience of phenotypic states in a synthetic gene network near a critical transition. We find that far from the critical transition an environmental perturbation may induce little to no phenotypic switching, whereas close to the critical transition the same perturbation can cause many cells to switch phenotypic states. This loss of resilience was observed for perturbations that interact directly with the gene circuit as well as for a variety of generic perturbations-such as salt, ethanol, or temperature shocks-that alter the state of the cell more broadly. We obtain qualitatively similar findings in natural gene circuits, such as the yeast GAL network. Our findings illustrate how phenotypic memory can become destabilized by environmental variability near a critical transition. DOI: http://dx.doi.org/10.7554/eLife.07935.001 eLife Sciences Publications, Ltd 2015-08-24 /pmc/articles/PMC4547091/ /pubmed/26302311 http://dx.doi.org/10.7554/eLife.07935 Text en © 2015, Axelrod et al http://creativecommons.org/licenses/by/4.0/ This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Computational and Systems Biology Axelrod, Kevin Sanchez, Alvaro Gore, Jeff Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title_full | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title_fullStr | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title_full_unstemmed | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title_short | Phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
title_sort | phenotypic states become increasingly sensitive to perturbations near a bifurcation in a synthetic gene network |
topic | Computational and Systems Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4547091/ https://www.ncbi.nlm.nih.gov/pubmed/26302311 http://dx.doi.org/10.7554/eLife.07935 |
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