Cargando…

High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea

This study presents genome-wide discovery of SNPs through next generation sequencing of the genome of Cicer reticulatum. Mapping of the C. reticulatum sequenced reads onto the draft genome assembly of C. arietinum (desi chickpea) resulted in identification of 842,104 genomic SNPs which were utilized...

Descripción completa

Detalles Bibliográficos
Autores principales:	Gaur, Rashmi, Jeena, Ganga, Shah, Niraj, Gupta, Shefali, Pradhan, Seema, Tyagi, Akhilesh K, Jain, Mukesh, Chattopadhyay, Debasis, Bhatia, Sabhyata
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4548218/ https://www.ncbi.nlm.nih.gov/pubmed/26303721 http://dx.doi.org/10.1038/srep13387

Ejemplares similares

High-Throughput SNP Discovery and Genotyping for Constructing a Saturated Linkage Map of Chickpea (Cicer arietinum L.)
por: Gaur, Rashmi, et al.
Publicado: (2012)

Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea
por: Khajuria, Yash Paul, et al.
Publicado: (2015)

The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes
por: Misra, Gopal, et al.
Publicado: (2014)

Global transcriptome analysis of developing chickpea (Cicer arietinum L.) seeds
por: Pradhan, Seema, et al.
Publicado: (2014)

An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.)
por: Parween, Sabiha, et al.
Publicado: (2015)

Genome-wide survey and expression analysis of F-box genes in chickpea
por: Gupta, Shefali, et al.
Publicado: (2015)

Advancing the STMS genomic resources for defining new locations on the intraspecific genetic linkage map of chickpea (Cicer arietinum L.)
por: Gaur, Rashmi, et al.
Publicado: (2011)

Dissecting the Root Nodule Transcriptome of Chickpea (Cicer arietinum L.)
por: Kant, Chandra, et al.
Publicado: (2016)

Genome-wide analysis of the CCCH zinc finger family identifies tissue specific and stress responsive candidates in chickpea (Cicer arietinum L.)
por: Pradhan, Seema, et al.
Publicado: (2017)

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)
por: Verma, Subodh, et al.
Publicado: (2015)

Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea
por: Bhatia, Himanshi, et al.
Publicado: (2018)

A New Set of ESTs from Chickpea (Cicer arietinum L.) Embryo Reveals Two Novel F-Box Genes, CarF-box_PP2 and CarF-box_LysM, with Potential Roles in Seed Development
por: Gupta, Shefali, et al.
Publicado: (2015)

Integrated physical, genetic and genome map of chickpea (Cicer arietinum L.)
por: Varshney, Rajeev K., et al.
Publicado: (2014)

Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea
por: Gujaria-Verma, Neha, et al.
Publicado: (2014)

Genome-wide association analysis to delineate high-quality SNPs for seed micronutrient density in chickpea (Cicer arietinum L.)
por: Fayaz, Humara, et al.
Publicado: (2022)

A linkage map for the B-genome of Arachis (Fabaceae) and its synteny to the A-genome
por: Moretzsohn, Márcio C, et al.
Publicado: (2009)

Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea
por: Garg, Rohini, et al.
Publicado: (2016)

Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development
por: Khemka, Niraj, et al.
Publicado: (2016)

De Novo Assembly of Chickpea Transcriptome Using Short Reads for Gene Discovery and Marker Identification
por: Garg, Rohini, et al.
Publicado: (2011)

Jumbled Genomes: Missing Apicomplexan Synteny
por: DeBarry, Jeremy D., et al.
Publicado: (2011)

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers
por: Agarwal, Gaurav, et al.
Publicado: (2012)

Expression of chickpea CIPK25 enhances root growth and tolerance to dehydration and salt stress in transgenic tobacco
por: Meena, Mukesh K., et al.
Publicado: (2015)

Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea
por: Basu, Udita, et al.
Publicado: (2018)

Genome-wide insertion–deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea
por: Das, Shouvik, et al.
Publicado: (2015)

Structured RNAs and synteny regions in the pig genome
por: Anthon, Christian, et al.
Publicado: (2014)

Genome‐wide profiling of miRNAs during seed development reveals their functional relevance in seed size/weight determination in chickpea
por: Khemka, Niraj, et al.
Publicado: (2021)

Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea
por: Upadhyaya, Hari D., et al.
Publicado: (2016)

A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea
por: Kujur, Alice, et al.
Publicado: (2015)

MicroRNA profiling provides insights into post-transcriptional regulation of gene expression in chickpea root apex under salinity and water deficiency
por: Khandal, Hitaishi, et al.
Publicado: (2017)

A Plasmodium Whole-Genome Synteny Map: Indels and Synteny Breakpoints as Foci for Species-Specific Genes
por: Kooij, Taco W. A, et al.
Publicado: (2005)

An Integrated Genomic Approach for Rapid Delineation of Candidate Genes Regulating Agro-Morphological Traits in Chickpea
por: Saxena, Maneesha S., et al.
Publicado: (2014)

Natural Allelic Diversity, Genetic Structure and Linkage Disequilibrium Pattern in Wild Chickpea
por: Saxena, Maneesha S., et al.
Publicado: (2014)

Translational Chickpea Genomics Consortium to Accelerate Genetic Gains in Chickpea (Cicer arietinum L.)
por: Palakurthi, Ramesh, et al.
Publicado: (2021)

CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics
por: Verma, Mohit, et al.
Publicado: (2015)

The JAX Synteny Browser for mouse-human comparative genomics
por: Kolishovski, Georgi, et al.
Publicado: (2019)

Investigation of Genes Encoding Calcineurin B-Like Protein Family in Legumes and Their Expression Analyses in Chickpea (Cicer arietinum L.)
por: Meena, Mukesh Kumar, et al.
Publicado: (2015)

Analysis of gene expression in response to water deficit of chickpea (Cicer arietinum L.) varieties differing in drought tolerance
por: Jain, Deepti, et al.
Publicado: (2010)

Integrating genomics for chickpea improvement: achievements and opportunities
por: Roorkiwal, Manish, et al.
Publicado: (2020)

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea
por: Srivastava, Rishi, et al.
Publicado: (2017)

Evolutionary and functional analysis of two‐component system in chickpea reveals CaRR13, a TypeB RR, as positive regulator of symbiosis
por: Tiwari, Manish, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_vop0vkfvc5ftq1q7dmqtcv79ep