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Adaptive Responses Limited by Intrinsic Noise

Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in se...

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Autores principales: Shankar, Prabhat, Nishikawa, Masatoshi, Shibata, Tatsuo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4549281/
https://www.ncbi.nlm.nih.gov/pubmed/26305221
http://dx.doi.org/10.1371/journal.pone.0136095
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author Shankar, Prabhat
Nishikawa, Masatoshi
Shibata, Tatsuo
author_facet Shankar, Prabhat
Nishikawa, Masatoshi
Shibata, Tatsuo
author_sort Shankar, Prabhat
collection PubMed
description Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in sensory inputs may impose a limit on the ability of adaptation systems. The relation between response and noise is well understood for equilibrium systems in the form of fluctuation response relation. However, the relation for nonequilibrium systems, including adaptive systems, are poorly understood. Here, we systematically explore such a relation between response and fluctuation in adaptation systems. We study the two network motifs, incoherent feedforward loops (iFFL) and negative feedback loops (nFBL), that can achieve perfect adaptation. We find that the response magnitude in adaption systems is limited by its intrinsic noise, implying that higher response would have higher noise component as well. Comparing the relation of response and noise in iFFL and nFBL, we show that whereas iFFL exhibits adaptation over a wider parameter range, nFBL offers higher response to noise ratio than iFFL. We also identify the condition that yields the upper limit of response for both network motifs. These results may explain the reason of why nFBL seems to be more abundant in nature for the implementation of adaption systems.
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spelling pubmed-45492812015-09-01 Adaptive Responses Limited by Intrinsic Noise Shankar, Prabhat Nishikawa, Masatoshi Shibata, Tatsuo PLoS One Research Article Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in sensory inputs may impose a limit on the ability of adaptation systems. The relation between response and noise is well understood for equilibrium systems in the form of fluctuation response relation. However, the relation for nonequilibrium systems, including adaptive systems, are poorly understood. Here, we systematically explore such a relation between response and fluctuation in adaptation systems. We study the two network motifs, incoherent feedforward loops (iFFL) and negative feedback loops (nFBL), that can achieve perfect adaptation. We find that the response magnitude in adaption systems is limited by its intrinsic noise, implying that higher response would have higher noise component as well. Comparing the relation of response and noise in iFFL and nFBL, we show that whereas iFFL exhibits adaptation over a wider parameter range, nFBL offers higher response to noise ratio than iFFL. We also identify the condition that yields the upper limit of response for both network motifs. These results may explain the reason of why nFBL seems to be more abundant in nature for the implementation of adaption systems. Public Library of Science 2015-08-25 /pmc/articles/PMC4549281/ /pubmed/26305221 http://dx.doi.org/10.1371/journal.pone.0136095 Text en © 2015 Shankar et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Shankar, Prabhat
Nishikawa, Masatoshi
Shibata, Tatsuo
Adaptive Responses Limited by Intrinsic Noise
title Adaptive Responses Limited by Intrinsic Noise
title_full Adaptive Responses Limited by Intrinsic Noise
title_fullStr Adaptive Responses Limited by Intrinsic Noise
title_full_unstemmed Adaptive Responses Limited by Intrinsic Noise
title_short Adaptive Responses Limited by Intrinsic Noise
title_sort adaptive responses limited by intrinsic noise
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4549281/
https://www.ncbi.nlm.nih.gov/pubmed/26305221
http://dx.doi.org/10.1371/journal.pone.0136095
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