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Adaptive Responses Limited by Intrinsic Noise
Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in se...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4549281/ https://www.ncbi.nlm.nih.gov/pubmed/26305221 http://dx.doi.org/10.1371/journal.pone.0136095 |
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author | Shankar, Prabhat Nishikawa, Masatoshi Shibata, Tatsuo |
author_facet | Shankar, Prabhat Nishikawa, Masatoshi Shibata, Tatsuo |
author_sort | Shankar, Prabhat |
collection | PubMed |
description | Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in sensory inputs may impose a limit on the ability of adaptation systems. The relation between response and noise is well understood for equilibrium systems in the form of fluctuation response relation. However, the relation for nonequilibrium systems, including adaptive systems, are poorly understood. Here, we systematically explore such a relation between response and fluctuation in adaptation systems. We study the two network motifs, incoherent feedforward loops (iFFL) and negative feedback loops (nFBL), that can achieve perfect adaptation. We find that the response magnitude in adaption systems is limited by its intrinsic noise, implying that higher response would have higher noise component as well. Comparing the relation of response and noise in iFFL and nFBL, we show that whereas iFFL exhibits adaptation over a wider parameter range, nFBL offers higher response to noise ratio than iFFL. We also identify the condition that yields the upper limit of response for both network motifs. These results may explain the reason of why nFBL seems to be more abundant in nature for the implementation of adaption systems. |
format | Online Article Text |
id | pubmed-4549281 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45492812015-09-01 Adaptive Responses Limited by Intrinsic Noise Shankar, Prabhat Nishikawa, Masatoshi Shibata, Tatsuo PLoS One Research Article Sensory systems have mechanisms to respond to the external environment and adapt to them. Such adaptive responses are effective for a wide dynamic range of sensing and perception of temporal change in stimulus. However, noise generated by the adaptation system itself as well as extrinsic noise in sensory inputs may impose a limit on the ability of adaptation systems. The relation between response and noise is well understood for equilibrium systems in the form of fluctuation response relation. However, the relation for nonequilibrium systems, including adaptive systems, are poorly understood. Here, we systematically explore such a relation between response and fluctuation in adaptation systems. We study the two network motifs, incoherent feedforward loops (iFFL) and negative feedback loops (nFBL), that can achieve perfect adaptation. We find that the response magnitude in adaption systems is limited by its intrinsic noise, implying that higher response would have higher noise component as well. Comparing the relation of response and noise in iFFL and nFBL, we show that whereas iFFL exhibits adaptation over a wider parameter range, nFBL offers higher response to noise ratio than iFFL. We also identify the condition that yields the upper limit of response for both network motifs. These results may explain the reason of why nFBL seems to be more abundant in nature for the implementation of adaption systems. Public Library of Science 2015-08-25 /pmc/articles/PMC4549281/ /pubmed/26305221 http://dx.doi.org/10.1371/journal.pone.0136095 Text en © 2015 Shankar et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Shankar, Prabhat Nishikawa, Masatoshi Shibata, Tatsuo Adaptive Responses Limited by Intrinsic Noise |
title | Adaptive Responses Limited by Intrinsic Noise |
title_full | Adaptive Responses Limited by Intrinsic Noise |
title_fullStr | Adaptive Responses Limited by Intrinsic Noise |
title_full_unstemmed | Adaptive Responses Limited by Intrinsic Noise |
title_short | Adaptive Responses Limited by Intrinsic Noise |
title_sort | adaptive responses limited by intrinsic noise |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4549281/ https://www.ncbi.nlm.nih.gov/pubmed/26305221 http://dx.doi.org/10.1371/journal.pone.0136095 |
work_keys_str_mv | AT shankarprabhat adaptiveresponseslimitedbyintrinsicnoise AT nishikawamasatoshi adaptiveresponseslimitedbyintrinsicnoise AT shibatatatsuo adaptiveresponseslimitedbyintrinsicnoise |