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Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species

Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-i...

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Autores principales: Lang, Carla, Costa, Flávia Regina Capellotto, Camargo, José Luís Campana, Durgante, Flávia Machado, Vicentini, Alberto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551484/
https://www.ncbi.nlm.nih.gov/pubmed/26312996
http://dx.doi.org/10.1371/journal.pone.0134521
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author Lang, Carla
Costa, Flávia Regina Capellotto
Camargo, José Luís Campana
Durgante, Flávia Machado
Vicentini, Alberto
author_facet Lang, Carla
Costa, Flávia Regina Capellotto
Camargo, José Luís Campana
Durgante, Flávia Machado
Vicentini, Alberto
author_sort Lang, Carla
collection PubMed
description Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-infrared spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of adult plants, so if young and adults have a similar spectral signature, discriminant functions based on FT-NIR spectra of adults can be used to identify leaves from young plants. We tested this with a sample of 419 plants in 13 Amazonian species from the genera Protium and Crepidospermum (Burseraceae). We obtained 12 spectral readings per plant, from adaxial and abaxial surfaces of dried leaves, and compared the rate of correct predictions of species with discriminant functions for different combinations of readings. We showed that the best models for predicting species in early developmental stages are those containing spectral data from both young and adult plants (98% correct predictions of external samples), but even using only adult spectra it is still possible to attain good levels of identification of young. We obtained an average of 75% correct identifications of young plants by discriminant equations based only on adults, when the most informative wavelengths were selected. Most species were accurately predicted (75–100% correct identifications), and only three had poor predictions (27–60%). These results were obtained despite the fact that spectra of young individuals were distinct from those of adults when species were analyzed individually. We concluded that FT-NIR has a high potential in the identification of species even at different ontogenetic stages, and that young plants can be identified based on spectra of adults with reasonable confidence.
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spelling pubmed-45514842015-09-01 Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species Lang, Carla Costa, Flávia Regina Capellotto Camargo, José Luís Campana Durgante, Flávia Machado Vicentini, Alberto PLoS One Research Article Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-infrared spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of adult plants, so if young and adults have a similar spectral signature, discriminant functions based on FT-NIR spectra of adults can be used to identify leaves from young plants. We tested this with a sample of 419 plants in 13 Amazonian species from the genera Protium and Crepidospermum (Burseraceae). We obtained 12 spectral readings per plant, from adaxial and abaxial surfaces of dried leaves, and compared the rate of correct predictions of species with discriminant functions for different combinations of readings. We showed that the best models for predicting species in early developmental stages are those containing spectral data from both young and adult plants (98% correct predictions of external samples), but even using only adult spectra it is still possible to attain good levels of identification of young. We obtained an average of 75% correct identifications of young plants by discriminant equations based only on adults, when the most informative wavelengths were selected. Most species were accurately predicted (75–100% correct identifications), and only three had poor predictions (27–60%). These results were obtained despite the fact that spectra of young individuals were distinct from those of adults when species were analyzed individually. We concluded that FT-NIR has a high potential in the identification of species even at different ontogenetic stages, and that young plants can be identified based on spectra of adults with reasonable confidence. Public Library of Science 2015-08-27 /pmc/articles/PMC4551484/ /pubmed/26312996 http://dx.doi.org/10.1371/journal.pone.0134521 Text en © 2015 Lang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Lang, Carla
Costa, Flávia Regina Capellotto
Camargo, José Luís Campana
Durgante, Flávia Machado
Vicentini, Alberto
Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title_full Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title_fullStr Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title_full_unstemmed Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title_short Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
title_sort near infrared spectroscopy facilitates rapid identification of both young and mature amazonian tree species
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551484/
https://www.ncbi.nlm.nih.gov/pubmed/26312996
http://dx.doi.org/10.1371/journal.pone.0134521
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