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Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species
Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-i...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551484/ https://www.ncbi.nlm.nih.gov/pubmed/26312996 http://dx.doi.org/10.1371/journal.pone.0134521 |
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author | Lang, Carla Costa, Flávia Regina Capellotto Camargo, José Luís Campana Durgante, Flávia Machado Vicentini, Alberto |
author_facet | Lang, Carla Costa, Flávia Regina Capellotto Camargo, José Luís Campana Durgante, Flávia Machado Vicentini, Alberto |
author_sort | Lang, Carla |
collection | PubMed |
description | Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-infrared spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of adult plants, so if young and adults have a similar spectral signature, discriminant functions based on FT-NIR spectra of adults can be used to identify leaves from young plants. We tested this with a sample of 419 plants in 13 Amazonian species from the genera Protium and Crepidospermum (Burseraceae). We obtained 12 spectral readings per plant, from adaxial and abaxial surfaces of dried leaves, and compared the rate of correct predictions of species with discriminant functions for different combinations of readings. We showed that the best models for predicting species in early developmental stages are those containing spectral data from both young and adult plants (98% correct predictions of external samples), but even using only adult spectra it is still possible to attain good levels of identification of young. We obtained an average of 75% correct identifications of young plants by discriminant equations based only on adults, when the most informative wavelengths were selected. Most species were accurately predicted (75–100% correct identifications), and only three had poor predictions (27–60%). These results were obtained despite the fact that spectra of young individuals were distinct from those of adults when species were analyzed individually. We concluded that FT-NIR has a high potential in the identification of species even at different ontogenetic stages, and that young plants can be identified based on spectra of adults with reasonable confidence. |
format | Online Article Text |
id | pubmed-4551484 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45514842015-09-01 Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species Lang, Carla Costa, Flávia Regina Capellotto Camargo, José Luís Campana Durgante, Flávia Machado Vicentini, Alberto PLoS One Research Article Precise identification of plant species requires a high level of knowledge by taxonomists and presence of reproductive material. This represents a major limitation for those working with seedlings and juveniles, which differ morphologically from adults and do not bear reproductive structures. Near-infrared spectroscopy (FT-NIR) has previously been shown to be effective in species discrimination of adult plants, so if young and adults have a similar spectral signature, discriminant functions based on FT-NIR spectra of adults can be used to identify leaves from young plants. We tested this with a sample of 419 plants in 13 Amazonian species from the genera Protium and Crepidospermum (Burseraceae). We obtained 12 spectral readings per plant, from adaxial and abaxial surfaces of dried leaves, and compared the rate of correct predictions of species with discriminant functions for different combinations of readings. We showed that the best models for predicting species in early developmental stages are those containing spectral data from both young and adult plants (98% correct predictions of external samples), but even using only adult spectra it is still possible to attain good levels of identification of young. We obtained an average of 75% correct identifications of young plants by discriminant equations based only on adults, when the most informative wavelengths were selected. Most species were accurately predicted (75–100% correct identifications), and only three had poor predictions (27–60%). These results were obtained despite the fact that spectra of young individuals were distinct from those of adults when species were analyzed individually. We concluded that FT-NIR has a high potential in the identification of species even at different ontogenetic stages, and that young plants can be identified based on spectra of adults with reasonable confidence. Public Library of Science 2015-08-27 /pmc/articles/PMC4551484/ /pubmed/26312996 http://dx.doi.org/10.1371/journal.pone.0134521 Text en © 2015 Lang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Lang, Carla Costa, Flávia Regina Capellotto Camargo, José Luís Campana Durgante, Flávia Machado Vicentini, Alberto Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title | Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title_full | Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title_fullStr | Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title_full_unstemmed | Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title_short | Near Infrared Spectroscopy Facilitates Rapid Identification of Both Young and Mature Amazonian Tree Species |
title_sort | near infrared spectroscopy facilitates rapid identification of both young and mature amazonian tree species |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4551484/ https://www.ncbi.nlm.nih.gov/pubmed/26312996 http://dx.doi.org/10.1371/journal.pone.0134521 |
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