Cargando…

Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies

The large diversity and volume of extracellular RNA (exRNA) data that will form the basis of the exRNA Atlas generated by the Extracellular RNA Communication Consortium pose a substantial data integration challenge. We here present the strategy that is being implemented by the exRNA Data Management...

Descripción completa

Detalles Bibliográficos
Autores principales:	Subramanian, Sai Lakshmi, Kitchen, Robert R., Alexander, Roger, Carter, Bob S., Cheung, Kei-Hoi, Laurent, Louise C., Pico, Alexander, Roberts, Lewis R., Roth, Matthew E., Rozowsky, Joel S., Su, Andrew I., Gerstein, Mark B., Milosavljevic, Aleksandar
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Co-Action Publishing 2015
Materias:	Special Issue: Extracellular RNA Communication Consortium
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4553261/ https://www.ncbi.nlm.nih.gov/pubmed/26320941 http://dx.doi.org/10.3402/jev.v4.27497

Ejemplares similares

Extracellular RNAs: development as biomarkers of human disease
por: Quinn, Joseph F., et al.
Publicado: (2015)

Meeting report: discussions and preliminary findings on extracellular RNA measurement methods from laboratories in the NIH Extracellular RNA Communication Consortium
por: Laurent, Louise C., et al.
Publicado: (2015)

The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) consortia: design, results and future prospects
por: Middeldorp, Christel M., et al.
Publicado: (2019)

Potential functional applications of extracellular vesicles: a report by the NIH Common Fund Extracellular RNA Communication Consortium
por: Quesenberry, Peter J., et al.
Publicado: (2015)

The NIH Extracellular RNA Communication Consortium
por: Ainsztein, Alexandra M., et al.
Publicado: (2015)

Biogenesis, delivery, and function of extracellular RNA
por: Patton, James G., et al.
Publicado: (2015)

The LifeCycle Project-EU Child Cohort Network: a federated analysis infrastructure and harmonized data of more than 250,000 children and parents
por: Jaddoe, Vincent W. V., et al.
Publicado: (2020)

Extending gene ontology in the context of extracellular RNA and vesicle communication
por: Cheung, Kei-Hoi, et al.
Publicado: (2016)

Trends in the incidence of dementia: design and methods in the Alzheimer Cohorts Consortium
por: Chibnik, Lori B., et al.
Publicado: (2017)

Scientific Integrity Principles and Best Practices: Recommendations from a Scientific Integrity Consortium
por: Kretser, Alison, et al.
Publicado: (2019)

Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
por: Alexopoulou, Dimitra, et al.
Publicado: (2009)

OMeta: an ontology-based, data-driven metadata tracking system
por: Singh, Indresh, et al.
Publicado: (2019)

Handbook of metadata, semantics and ontologies
por: Sicilia, Miguel-Angel
Publicado: (2013)

Clinical MetaData ontology: a simple classification scheme for data elements of clinical data based on semantics
por: Kim, Hye Hyeon, et al.
Publicado: (2019)

Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases
por: Martínez-Romero, Marcos, et al.
Publicado: (2019)

Clinical Data Element Ontology for Unified Indexing and Retrieval of Data Elements across Multiple Metadata Registries
por: Jeong, Senator, et al.
Publicado: (2014)

Tiling array data analysis: a multiscale approach using wavelets
por: Karpikov, Alexander, et al.
Publicado: (2011)

CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata
por: Bukhari, Syed Ahmad Chan, et al.
Publicado: (2018)

Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata
por: Hu, Wei, et al.
Publicado: (2017)

Identification of multiple isomeric core chitobiose–modified high-mannose and paucimannose N-glycans in the planarian Schmidtea mediterranea
por: Subramanian, Sabarinath Peruvemba, et al.
Publicado: (2018)

Modeling RNA secondary structure folding ensembles using SHAPE mapping data
por: Spasic, Aleksandar, et al.
Publicado: (2018)

Using semantic web rules to reason on an ontology of pseudogenes
por: Holford, Matthew E., et al.
Publicado: (2010)

A reference set of curated biomedical data and metadata from clinical case reports
por: Caufield, J. Harry, et al.
Publicado: (2018)

Development of Health Information Search Engine Based on Metadata and Ontology
por: Song, Tae-Min, et al.
Publicado: (2014)

Mining data and metadata from the gene expression omnibus
por: Wang, Zichen, et al.
Publicado: (2018)

sCLIP—an integrated platform to study RNA–protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs
por: Kargapolova, Yulia, et al.
Publicado: (2017)

Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data
por: Chien, Chia-Hung, et al.
Publicado: (2011)

BioGraph: Data Model for Linking and Querying Diverse Biological Metadata
por: Veljković, Aleksandar N., et al.
Publicado: (2023)

Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data
por: Hayamizu, Terry F., et al.
Publicado: (2015)

Linked open data-based framework for automatic biomedical ontology generation
por: Alobaidi, Mazen, et al.
Publicado: (2018)

Formal axioms in biomedical ontologies improve analysis and interpretation of associated data
por: Smaili, Fatima Zohra, et al.
Publicado: (2020)

The Data Use Ontology to streamline responsible access to human biomedical datasets
por: Lawson, Jonathan, et al.
Publicado: (2021)

Interactions of the G quartet forming semaphorin 3F RNA with the RGG box domain of the fragile X protein family
por: Menon, Lakshmi, et al.
Publicado: (2007)

Extracellular Regulation of Bone Morphogenetic Protein Activity by the Microfibril Component Fibrillin-1
por: Wohl, Alexander P., et al.
Publicado: (2016)

Relations in biomedical ontologies
por: Smith, Barry, et al.
Publicado: (2005)

Mechanisms in biomedical ontology
por: Röhl, Johannes
Publicado: (2012)

The Ontology for Biomedical Investigations
por: Bandrowski, Anita, et al.
Publicado: (2016)

Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data
por: Cano, Marco, et al.
Publicado: (2022)

Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data
por: Cano, Marco A., et al.
Publicado: (2023)

NeuroBridge ontology: computable provenance metadata to give the long tail of neuroimaging data a FAIR chance for secondary use
por: Sahoo, Satya S., et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_ihce8tfklfgckkplp8stfhj9uo