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Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool

DiameterJ is an open source image analysis plugin for ImageJ. DiameterJ produces ten files for every image that it analyzes. These files include the images that were analyzed, the data to create histograms of fiber radius, pore size, fiber orientation, and summary statistics, as well as images to ch...

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Detalles Bibliográficos
Autores principales: Hotaling, Nathan A., Bharti, Kapil, Kriel, Haydn, Simon, Carl G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556745/
https://www.ncbi.nlm.nih.gov/pubmed/26380840
http://dx.doi.org/10.1016/j.dib.2015.07.012
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author Hotaling, Nathan A.
Bharti, Kapil
Kriel, Haydn
Simon, Carl G.
author_facet Hotaling, Nathan A.
Bharti, Kapil
Kriel, Haydn
Simon, Carl G.
author_sort Hotaling, Nathan A.
collection PubMed
description DiameterJ is an open source image analysis plugin for ImageJ. DiameterJ produces ten files for every image that it analyzes. These files include the images that were analyzed, the data to create histograms of fiber radius, pore size, fiber orientation, and summary statistics, as well as images to check the output of DiameterJ. DiameterJ was validated with 130 in silico-derived, digital, synthetic images and 24 scanning electron microscope (SEM) images of steel wire samples with a known diameter distribution. Once validated, DiameterJ was used to analyze SEM images of electrospun polymeric nanofibers, including a comparison of different segmentation algorithms. In this article, all digital synthetic images, SEM images, and their segmentations are included. Additionally, DiameterJ’s raw output files, and processed data is included for the reader. The data provided herein was used to generate the figures in DiameterJ: A Validated Open Source Nanofiber Diameter Measurement Tool[1], where more discussion can be found.
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spelling pubmed-45567452015-09-17 Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool Hotaling, Nathan A. Bharti, Kapil Kriel, Haydn Simon, Carl G. Data Brief Data Article DiameterJ is an open source image analysis plugin for ImageJ. DiameterJ produces ten files for every image that it analyzes. These files include the images that were analyzed, the data to create histograms of fiber radius, pore size, fiber orientation, and summary statistics, as well as images to check the output of DiameterJ. DiameterJ was validated with 130 in silico-derived, digital, synthetic images and 24 scanning electron microscope (SEM) images of steel wire samples with a known diameter distribution. Once validated, DiameterJ was used to analyze SEM images of electrospun polymeric nanofibers, including a comparison of different segmentation algorithms. In this article, all digital synthetic images, SEM images, and their segmentations are included. Additionally, DiameterJ’s raw output files, and processed data is included for the reader. The data provided herein was used to generate the figures in DiameterJ: A Validated Open Source Nanofiber Diameter Measurement Tool[1], where more discussion can be found. Elsevier 2015-07-29 /pmc/articles/PMC4556745/ /pubmed/26380840 http://dx.doi.org/10.1016/j.dib.2015.07.012 Text en http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Hotaling, Nathan A.
Bharti, Kapil
Kriel, Haydn
Simon, Carl G.
Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title_full Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title_fullStr Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title_full_unstemmed Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title_short Dataset for the validation and use of DiameterJ an open source nanofiber diameter measurement tool
title_sort dataset for the validation and use of diameterj an open source nanofiber diameter measurement tool
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556745/
https://www.ncbi.nlm.nih.gov/pubmed/26380840
http://dx.doi.org/10.1016/j.dib.2015.07.012
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