Cargando…
Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556777/ https://www.ncbi.nlm.nih.gov/pubmed/26380841 http://dx.doi.org/10.1016/j.dib.2015.08.003 |
_version_ | 1782388399460581376 |
---|---|
author | Emery, Samantha J. Lacey, Ernest Haynes, Paul A. |
author_facet | Emery, Samantha J. Lacey, Ernest Haynes, Paul A. |
author_sort | Emery, Samantha J. |
collection | PubMed |
description | Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic culture, and protein extracts were subjected to in-solution digest and online fractionation using Gas Phase Fractionation (GPF). Recent reclassification of genome databases for subassemblages was evaluated for database-dependent loss of information, and proteome composition of different isolates was analysed for biologically relevant assemblage-independent variation. The data from this study are related to the research article “Quantitative proteomics analysis of Giardia duodenalis Assemblage A – a baseline for host, assemblage and isolate variation” published in Proteomics (Emery et al., 2015 [1]). |
format | Online Article Text |
id | pubmed-4556777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-45567772015-09-17 Data from a proteomic baseline study of Assemblage A in Giardia duodenalis Emery, Samantha J. Lacey, Ernest Haynes, Paul A. Data Brief Data Article Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic culture, and protein extracts were subjected to in-solution digest and online fractionation using Gas Phase Fractionation (GPF). Recent reclassification of genome databases for subassemblages was evaluated for database-dependent loss of information, and proteome composition of different isolates was analysed for biologically relevant assemblage-independent variation. The data from this study are related to the research article “Quantitative proteomics analysis of Giardia duodenalis Assemblage A – a baseline for host, assemblage and isolate variation” published in Proteomics (Emery et al., 2015 [1]). Elsevier 2015-08-19 /pmc/articles/PMC4556777/ /pubmed/26380841 http://dx.doi.org/10.1016/j.dib.2015.08.003 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Data Article Emery, Samantha J. Lacey, Ernest Haynes, Paul A. Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title | Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title_full | Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title_fullStr | Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title_full_unstemmed | Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title_short | Data from a proteomic baseline study of Assemblage A in Giardia duodenalis |
title_sort | data from a proteomic baseline study of assemblage a in giardia duodenalis |
topic | Data Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556777/ https://www.ncbi.nlm.nih.gov/pubmed/26380841 http://dx.doi.org/10.1016/j.dib.2015.08.003 |
work_keys_str_mv | AT emerysamanthaj datafromaproteomicbaselinestudyofassemblageaingiardiaduodenalis AT laceyernest datafromaproteomicbaselinestudyofassemblageaingiardiaduodenalis AT haynespaula datafromaproteomicbaselinestudyofassemblageaingiardiaduodenalis |