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Data from a proteomic baseline study of Assemblage A in Giardia duodenalis

Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic...

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Autores principales: Emery, Samantha J., Lacey, Ernest, Haynes, Paul A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556777/
https://www.ncbi.nlm.nih.gov/pubmed/26380841
http://dx.doi.org/10.1016/j.dib.2015.08.003
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author Emery, Samantha J.
Lacey, Ernest
Haynes, Paul A.
author_facet Emery, Samantha J.
Lacey, Ernest
Haynes, Paul A.
author_sort Emery, Samantha J.
collection PubMed
description Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic culture, and protein extracts were subjected to in-solution digest and online fractionation using Gas Phase Fractionation (GPF). Recent reclassification of genome databases for subassemblages was evaluated for database-dependent loss of information, and proteome composition of different isolates was analysed for biologically relevant assemblage-independent variation. The data from this study are related to the research article “Quantitative proteomics analysis of Giardia duodenalis Assemblage A – a baseline for host, assemblage and isolate variation” published in Proteomics (Emery et al., 2015 [1]).
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spelling pubmed-45567772015-09-17 Data from a proteomic baseline study of Assemblage A in Giardia duodenalis Emery, Samantha J. Lacey, Ernest Haynes, Paul A. Data Brief Data Article Eight Assemblage A strains from the protozoan parasite Giardia duodenalis were analysed using label-free quantitative shotgun proteomics, to evaluate inter- and intra-assemblage variation and complement available genetic and transcriptomic data. Isolates were grown in biological triplicate in axenic culture, and protein extracts were subjected to in-solution digest and online fractionation using Gas Phase Fractionation (GPF). Recent reclassification of genome databases for subassemblages was evaluated for database-dependent loss of information, and proteome composition of different isolates was analysed for biologically relevant assemblage-independent variation. The data from this study are related to the research article “Quantitative proteomics analysis of Giardia duodenalis Assemblage A – a baseline for host, assemblage and isolate variation” published in Proteomics (Emery et al., 2015 [1]). Elsevier 2015-08-19 /pmc/articles/PMC4556777/ /pubmed/26380841 http://dx.doi.org/10.1016/j.dib.2015.08.003 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Data Article
Emery, Samantha J.
Lacey, Ernest
Haynes, Paul A.
Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title_full Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title_fullStr Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title_full_unstemmed Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title_short Data from a proteomic baseline study of Assemblage A in Giardia duodenalis
title_sort data from a proteomic baseline study of assemblage a in giardia duodenalis
topic Data Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4556777/
https://www.ncbi.nlm.nih.gov/pubmed/26380841
http://dx.doi.org/10.1016/j.dib.2015.08.003
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