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Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India

BACKGROUND: Acinetobacter has gained importance as a multi-drug resistant and hence a difficult to treat pathogen. This study was done to characterize our isolates with respect to drug resistance and presence of beta-lactamases which is a major mechanism of resistance and to type using RAPD and MLST...

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Autores principales: Rynga, Dabet, Shariff, Malini, Deb, Monorama
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559170/
https://www.ncbi.nlm.nih.gov/pubmed/26338039
http://dx.doi.org/10.1186/s12941-015-0101-5
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author Rynga, Dabet
Shariff, Malini
Deb, Monorama
author_facet Rynga, Dabet
Shariff, Malini
Deb, Monorama
author_sort Rynga, Dabet
collection PubMed
description BACKGROUND: Acinetobacter has gained importance as a multi-drug resistant and hence a difficult to treat pathogen. This study was done to characterize our isolates with respect to drug resistance and presence of beta-lactamases which is a major mechanism of resistance and to type using RAPD and MLST so that comparison of our clones can be made with the existing international clones. METHODS: 100 isolates recovered from clinical samples from two hospitals in Delhi were tested for their susceptibility against major groups of antimicrobials. The resistant isolates were screened and confirmed phenotypically for presence of ESBL, MBL and AmpC and MBLs also by PCR. The isolates were typed by RAPD and MLST. RESULTS: Out of the 100 isolates, 91, 78 and 2 % were MDR, XDR and PDR respectively. 97, 100 and 85 were screen positive for ESBL, AmpC and MBL respectively. Of these, 38.1 % were confirmed phenotypically to produce ESBL, 99 % produced AmpC and 29.4 % produced MBL comprising of GIM, VIM, SIM and IMP. MLST showed known STs 110, 188, 146, 69, 103, 108 and 194. Eight new STs were encountered. The RAPD showed a high degree of genetic variability among the isolates. CONCLUSION: Majority of our isolates were MDR, producing one or more types of beta-lactamases. We encountered drug resistant international clones by MLST which are found in other continents there by confirming their spread to Indian sub continent. No data on ST types of other Indian isolates is available in the MLST database and hence comparison is not possible.
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spelling pubmed-45591702015-09-04 Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India Rynga, Dabet Shariff, Malini Deb, Monorama Ann Clin Microbiol Antimicrob Research BACKGROUND: Acinetobacter has gained importance as a multi-drug resistant and hence a difficult to treat pathogen. This study was done to characterize our isolates with respect to drug resistance and presence of beta-lactamases which is a major mechanism of resistance and to type using RAPD and MLST so that comparison of our clones can be made with the existing international clones. METHODS: 100 isolates recovered from clinical samples from two hospitals in Delhi were tested for their susceptibility against major groups of antimicrobials. The resistant isolates were screened and confirmed phenotypically for presence of ESBL, MBL and AmpC and MBLs also by PCR. The isolates were typed by RAPD and MLST. RESULTS: Out of the 100 isolates, 91, 78 and 2 % were MDR, XDR and PDR respectively. 97, 100 and 85 were screen positive for ESBL, AmpC and MBL respectively. Of these, 38.1 % were confirmed phenotypically to produce ESBL, 99 % produced AmpC and 29.4 % produced MBL comprising of GIM, VIM, SIM and IMP. MLST showed known STs 110, 188, 146, 69, 103, 108 and 194. Eight new STs were encountered. The RAPD showed a high degree of genetic variability among the isolates. CONCLUSION: Majority of our isolates were MDR, producing one or more types of beta-lactamases. We encountered drug resistant international clones by MLST which are found in other continents there by confirming their spread to Indian sub continent. No data on ST types of other Indian isolates is available in the MLST database and hence comparison is not possible. BioMed Central 2015-09-04 /pmc/articles/PMC4559170/ /pubmed/26338039 http://dx.doi.org/10.1186/s12941-015-0101-5 Text en © Rynga et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Rynga, Dabet
Shariff, Malini
Deb, Monorama
Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title_full Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title_fullStr Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title_full_unstemmed Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title_short Phenotypic and molecular characterization of clinical isolates of Acinetobacter baumannii isolated from Delhi, India
title_sort phenotypic and molecular characterization of clinical isolates of acinetobacter baumannii isolated from delhi, india
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4559170/
https://www.ncbi.nlm.nih.gov/pubmed/26338039
http://dx.doi.org/10.1186/s12941-015-0101-5
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