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The need for novel informatics tools for integrating and planning research in molecular and cellular cognition

The sheer volume and complexity of publications in the biological sciences are straining traditional approaches to research planning. Nowhere is this problem more serious than in molecular and cellular cognition, since in this neuroscience field, researchers routinely use approaches and information...

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Detalles Bibliográficos
Autores principales: Silva, Alcino J., Müller, Klaus-Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4561409/
https://www.ncbi.nlm.nih.gov/pubmed/26286658
http://dx.doi.org/10.1101/lm.029355.112
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author Silva, Alcino J.
Müller, Klaus-Robert
author_facet Silva, Alcino J.
Müller, Klaus-Robert
author_sort Silva, Alcino J.
collection PubMed
description The sheer volume and complexity of publications in the biological sciences are straining traditional approaches to research planning. Nowhere is this problem more serious than in molecular and cellular cognition, since in this neuroscience field, researchers routinely use approaches and information from a variety of areas in neuroscience and other biology fields. Additionally, the multilevel integration process characteristic of this field involves the establishment of experimental connections between molecular, electrophysiological, behavioral, and even cognitive data. This multidisciplinary integration process requires strategies and approaches that originate in several different fields, which greatly increases the complexity and demands of this process. Although causal assertions, where phenomenon A is thought to contribute or relate to B, are at the center of this integration process and key to research in biology, there are currently no tools to help scientists keep track of the increasingly more complex network of causal connections they use when making research decisions. Here, we propose the development of semiautomated graphical and interactive tools to help neuroscientists and other biologists, including those working in molecular and cellular cognition, to track, map, and weight causal evidence in research papers. There is a great need for a concerted effort by biologists, computer scientists, and funding institutions to develop maps of causal information that would aid in integration of research findings and in experiment planning.
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spelling pubmed-45614092016-09-01 The need for novel informatics tools for integrating and planning research in molecular and cellular cognition Silva, Alcino J. Müller, Klaus-Robert Learn Mem Review The sheer volume and complexity of publications in the biological sciences are straining traditional approaches to research planning. Nowhere is this problem more serious than in molecular and cellular cognition, since in this neuroscience field, researchers routinely use approaches and information from a variety of areas in neuroscience and other biology fields. Additionally, the multilevel integration process characteristic of this field involves the establishment of experimental connections between molecular, electrophysiological, behavioral, and even cognitive data. This multidisciplinary integration process requires strategies and approaches that originate in several different fields, which greatly increases the complexity and demands of this process. Although causal assertions, where phenomenon A is thought to contribute or relate to B, are at the center of this integration process and key to research in biology, there are currently no tools to help scientists keep track of the increasingly more complex network of causal connections they use when making research decisions. Here, we propose the development of semiautomated graphical and interactive tools to help neuroscientists and other biologists, including those working in molecular and cellular cognition, to track, map, and weight causal evidence in research papers. There is a great need for a concerted effort by biologists, computer scientists, and funding institutions to develop maps of causal information that would aid in integration of research findings and in experiment planning. Cold Spring Harbor Laboratory Press 2015-09 /pmc/articles/PMC4561409/ /pubmed/26286658 http://dx.doi.org/10.1101/lm.029355.112 Text en © Silva and Müller 2015.; Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first 12 months after the full-issue publication date (see http://learnmem.cshlp.org/site/misc/terms.xhtml). After 12 months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.
spellingShingle Review
Silva, Alcino J.
Müller, Klaus-Robert
The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title_full The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title_fullStr The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title_full_unstemmed The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title_short The need for novel informatics tools for integrating and planning research in molecular and cellular cognition
title_sort need for novel informatics tools for integrating and planning research in molecular and cellular cognition
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4561409/
https://www.ncbi.nlm.nih.gov/pubmed/26286658
http://dx.doi.org/10.1101/lm.029355.112
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