Cargando…
Topological data analysis of contagion maps for examining spreading processes on networks
Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters o...
Autores principales: | , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566922/ https://www.ncbi.nlm.nih.gov/pubmed/26194875 http://dx.doi.org/10.1038/ncomms8723 |
_version_ | 1782389748029980672 |
---|---|
author | Taylor, Dane Klimm, Florian Harrington, Heather A. Kramár, Miroslav Mischaikow, Konstantin Porter, Mason A. Mucha, Peter J. |
author_facet | Taylor, Dane Klimm, Florian Harrington, Heather A. Kramár, Miroslav Mischaikow, Konstantin Porter, Mason A. Mucha, Peter J. |
author_sort | Taylor, Dane |
collection | PubMed |
description | Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct “contagion maps” that use multiple contagions on a network to map the nodes as a point cloud. By analyzing the topology, geometry, and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modeling, forecast, and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks. |
format | Online Article Text |
id | pubmed-4566922 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
record_format | MEDLINE/PubMed |
spelling | pubmed-45669222016-01-21 Topological data analysis of contagion maps for examining spreading processes on networks Taylor, Dane Klimm, Florian Harrington, Heather A. Kramár, Miroslav Mischaikow, Konstantin Porter, Mason A. Mucha, Peter J. Nat Commun Article Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct “contagion maps” that use multiple contagions on a network to map the nodes as a point cloud. By analyzing the topology, geometry, and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modeling, forecast, and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks. 2015-07-21 /pmc/articles/PMC4566922/ /pubmed/26194875 http://dx.doi.org/10.1038/ncomms8723 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Taylor, Dane Klimm, Florian Harrington, Heather A. Kramár, Miroslav Mischaikow, Konstantin Porter, Mason A. Mucha, Peter J. Topological data analysis of contagion maps for examining spreading processes on networks |
title | Topological data analysis of contagion maps for examining spreading processes on networks |
title_full | Topological data analysis of contagion maps for examining spreading processes on networks |
title_fullStr | Topological data analysis of contagion maps for examining spreading processes on networks |
title_full_unstemmed | Topological data analysis of contagion maps for examining spreading processes on networks |
title_short | Topological data analysis of contagion maps for examining spreading processes on networks |
title_sort | topological data analysis of contagion maps for examining spreading processes on networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566922/ https://www.ncbi.nlm.nih.gov/pubmed/26194875 http://dx.doi.org/10.1038/ncomms8723 |
work_keys_str_mv | AT taylordane topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT klimmflorian topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT harringtonheathera topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT kramarmiroslav topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT mischaikowkonstantin topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT portermasona topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks AT muchapeterj topologicaldataanalysisofcontagionmapsforexaminingspreadingprocessesonnetworks |