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Topological data analysis of contagion maps for examining spreading processes on networks

Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters o...

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Detalles Bibliográficos
Autores principales: Taylor, Dane, Klimm, Florian, Harrington, Heather A., Kramár, Miroslav, Mischaikow, Konstantin, Porter, Mason A., Mucha, Peter J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566922/
https://www.ncbi.nlm.nih.gov/pubmed/26194875
http://dx.doi.org/10.1038/ncomms8723
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author Taylor, Dane
Klimm, Florian
Harrington, Heather A.
Kramár, Miroslav
Mischaikow, Konstantin
Porter, Mason A.
Mucha, Peter J.
author_facet Taylor, Dane
Klimm, Florian
Harrington, Heather A.
Kramár, Miroslav
Mischaikow, Konstantin
Porter, Mason A.
Mucha, Peter J.
author_sort Taylor, Dane
collection PubMed
description Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct “contagion maps” that use multiple contagions on a network to map the nodes as a point cloud. By analyzing the topology, geometry, and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modeling, forecast, and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks.
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spelling pubmed-45669222016-01-21 Topological data analysis of contagion maps for examining spreading processes on networks Taylor, Dane Klimm, Florian Harrington, Heather A. Kramár, Miroslav Mischaikow, Konstantin Porter, Mason A. Mucha, Peter J. Nat Commun Article Social and biological contagions are influenced by the spatial embeddedness of networks. Historically, many epidemics spread as a wave across part of the Earth’s surface; however, in modern contagions long-range edges—for example, due to airline transportation or communication media—allow clusters of a contagion to appear in distant locations. Here we study the spread of contagions on networks through a methodology grounded in topological data analysis and nonlinear dimension reduction. We construct “contagion maps” that use multiple contagions on a network to map the nodes as a point cloud. By analyzing the topology, geometry, and dimensionality of manifold structure in such point clouds, we reveal insights to aid in the modeling, forecast, and control of spreading processes. Our approach highlights contagion maps also as a viable tool for inferring low-dimensional structure in networks. 2015-07-21 /pmc/articles/PMC4566922/ /pubmed/26194875 http://dx.doi.org/10.1038/ncomms8723 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Taylor, Dane
Klimm, Florian
Harrington, Heather A.
Kramár, Miroslav
Mischaikow, Konstantin
Porter, Mason A.
Mucha, Peter J.
Topological data analysis of contagion maps for examining spreading processes on networks
title Topological data analysis of contagion maps for examining spreading processes on networks
title_full Topological data analysis of contagion maps for examining spreading processes on networks
title_fullStr Topological data analysis of contagion maps for examining spreading processes on networks
title_full_unstemmed Topological data analysis of contagion maps for examining spreading processes on networks
title_short Topological data analysis of contagion maps for examining spreading processes on networks
title_sort topological data analysis of contagion maps for examining spreading processes on networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4566922/
https://www.ncbi.nlm.nih.gov/pubmed/26194875
http://dx.doi.org/10.1038/ncomms8723
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