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BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences

Virtualization is becoming increasingly important in bioscience, enabling assembly and provisioning of complete computer setups, including operating system, data, software, and services packaged as virtual machine images (VMIs). We present an open catalog of VMIs for the life sciences, where scienti...

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Detalles Bibliográficos
Autores principales: Dahlö, Martin, Haziza, Frédéric, Kallio, Aleksi, Korpelainen, Eija, Bongcam-Rudloff, Erik, Spjuth, Ola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Libertas Academica 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567039/
https://www.ncbi.nlm.nih.gov/pubmed/26401099
http://dx.doi.org/10.4137/BBI.S28636
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author Dahlö, Martin
Haziza, Frédéric
Kallio, Aleksi
Korpelainen, Eija
Bongcam-Rudloff, Erik
Spjuth, Ola
author_facet Dahlö, Martin
Haziza, Frédéric
Kallio, Aleksi
Korpelainen, Eija
Bongcam-Rudloff, Erik
Spjuth, Ola
author_sort Dahlö, Martin
collection PubMed
description Virtualization is becoming increasingly important in bioscience, enabling assembly and provisioning of complete computer setups, including operating system, data, software, and services packaged as virtual machine images (VMIs). We present an open catalog of VMIs for the life sciences, where scientists can share information about images and optionally upload them to a server equipped with a large file system and fast Internet connection. Other scientists can then search for and download images that can be run on the local computer or in a cloud computing environment, providing easy access to bioinformatics environments. We also describe applications where VMIs aid life science research, including distributing tools and data, supporting reproducible analysis, and facilitating education. BioImg.org is freely available at: https://bioimg.org.
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spelling pubmed-45670392015-09-23 BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences Dahlö, Martin Haziza, Frédéric Kallio, Aleksi Korpelainen, Eija Bongcam-Rudloff, Erik Spjuth, Ola Bioinform Biol Insights Technical Advance Virtualization is becoming increasingly important in bioscience, enabling assembly and provisioning of complete computer setups, including operating system, data, software, and services packaged as virtual machine images (VMIs). We present an open catalog of VMIs for the life sciences, where scientists can share information about images and optionally upload them to a server equipped with a large file system and fast Internet connection. Other scientists can then search for and download images that can be run on the local computer or in a cloud computing environment, providing easy access to bioinformatics environments. We also describe applications where VMIs aid life science research, including distributing tools and data, supporting reproducible analysis, and facilitating education. BioImg.org is freely available at: https://bioimg.org. Libertas Academica 2015-09-10 /pmc/articles/PMC4567039/ /pubmed/26401099 http://dx.doi.org/10.4137/BBI.S28636 Text en © 2015 the author(s), publisher and licensee Libertas Academica Ltd. This is an open-access article distributed under the terms of the Creative Commons CC-BY-NC 3.0 License.
spellingShingle Technical Advance
Dahlö, Martin
Haziza, Frédéric
Kallio, Aleksi
Korpelainen, Eija
Bongcam-Rudloff, Erik
Spjuth, Ola
BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title_full BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title_fullStr BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title_full_unstemmed BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title_short BioImg.org: A Catalog of Virtual Machine Images for the Life Sciences
title_sort bioimg.org: a catalog of virtual machine images for the life sciences
topic Technical Advance
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4567039/
https://www.ncbi.nlm.nih.gov/pubmed/26401099
http://dx.doi.org/10.4137/BBI.S28636
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