Cargando…

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR

We present here the performance of the WeNMR CS-Rosetta3 web server in CASD-NMR, the critical assessment of automated structure determination by NMR. The CS-Rosetta server uses only chemical shifts for structure prediction, in combination, when available, with a post-scoring procedure based on unass...

Descripción completa

Detalles Bibliográficos
Autores principales:	van der Schot, Gijs, Bonvin, Alexandre M. J. J.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer Netherlands 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4569659/ https://www.ncbi.nlm.nih.gov/pubmed/25982706 http://dx.doi.org/10.1007/s10858-015-9942-7

Ejemplares similares

Structural Biology in the Clouds: The WeNMR-EOSC Ecosystem
por: Honorato, Rodrigo V., et al.
Publicado: (2021)

Analysis of the structural quality of the CASD-NMR 2013 entries
por: Ragan, Timothy J., et al.
Publicado: (2015)

The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013
por: Rosato, Antonio, et al.
Publicado: (2015)

Recent Advances in NMR Protein Structure Prediction with ROSETTA
por: Koehler Leman, Julia, et al.
Publicado: (2023)

NMR Constraints Analyser: a web-server for the graphical analysis of NMR experimental constraints
por: Heller, Davide Martin, et al.
Publicado: (2010)

GeNMR: a web server for rapid NMR-based protein structure determination
por: Berjanskii, Mark, et al.
Publicado: (2009)

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data
por: Wishart, David S., et al.
Publicado: (2008)

RosettaDesign server for protein design
por: Liu, Yi, et al.
Publicado: (2006)

The eNMR platform for structural biology
por: Bonvin, Alexandre M. J. J., et al.
Publicado: (2010)

RosettaBackrub—a web server for flexible backbone protein structure modeling and design
por: Lauck, Florian, et al.
Publicado: (2010)

The RosettaDock server for local protein–protein docking
por: Lyskov, Sergey, et al.
Publicado: (2008)

Rosetta FlexPepDock web server—high resolution modeling of peptide–protein interactions
por: London, Nir, et al.
Publicado: (2011)

RosettaAntibody: antibody variable region homology modeling server
por: Sircar, Aroop, et al.
Publicado: (2009)

ARIAweb: a server for automated NMR structure calculation
por: Allain, Fabrice, et al.
Publicado: (2020)

Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures
por: Mao, Binchen, et al.
Publicado: (2014)

Serverification of Molecular Modeling Applications: The Rosetta Online Server That Includes Everyone (ROSIE)
por: Lyskov, Sergey, et al.
Publicado: (2013)

ShiftCrypt: a web server to understand and biophysically align proteins through their NMR chemical shift values
por: Orlando, Gabriele, et al.
Publicado: (2020)

COLMARq: A Web Server for 2D NMR Peak Picking and Quantitative Comparative Analysis of Cohorts of Metabolomics Samples
por: Li, Da-Wei, et al.
Publicado: (2022)

Robustification of RosettaAntibody and Rosetta SnugDock
por: Jeliazkov, Jeliazko R., et al.
Publicado: (2021)

CSI 3.0: a web server for identifying secondary and super-secondary structure in proteins using NMR chemical shifts
por: Hafsa, Noor E., et al.
Publicado: (2015)

Protocols for Molecular Modeling with Rosetta3 and RosettaScripts
por: Bender, Brian J., et al.
Publicado: (2016)

Real-Time PyMOL Visualization for Rosetta and PyRosetta
por: Baugh, Evan H., et al.
Publicado: (2011)

9-O-Acetylation of sialic acids is catalysed by CASD1 via a covalent acetyl-enzyme intermediate
por: Baumann, Anna-Maria T., et al.
Publicado: (2015)

Rapid zero-trans kinetics of Cs(+) exchange in human erythrocytes quantified by dissolution hyperpolarized (133)Cs(+) NMR spectroscopy
por: Kuchel, Philip W., et al.
Publicado: (2019)

NMR resonance assignments of NarE, a putative ADP-ribosylating toxin from Neisseria meningitidis
por: Carlier, Ludovic, et al.
Publicado: (2010)

Mission Rosetta
por: Elsa Montagnon
Publicado: (2008)

The Rosetta Stone
por: Petsko, Gregory A
Publicado: (2001)

phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta
por: Terwilliger, Thomas C., et al.
Publicado: (2012)

3D-DART: a DNA structure modelling server
por: van Dijk, Marc, et al.
Publicado: (2009)

Characterization of nucleosome sediments for protein interaction studies by solid-state NMR spectroscopy
por: le Paige, Ulric B., et al.
Publicado: (2021)

Role of Sialyl-O-Acetyltransferase CASD1 on GD2 Ganglioside O-Acetylation in Breast Cancer Cells
por: Cavdarli, Sumeyye, et al.
Publicado: (2021)

RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
por: Fleishman, Sarel J., et al.
Publicado: (2011)

Biological NMR
por: Wand, A Joshua
Publicado: (2019)

NMR of paramagnetic molecules
por: Berliner, Lawrence J, et al.
Publicado: (1993)

NMR for chemists and biologists
por: Carbajo, Rodrigo J, et al.
Publicado: (2013)

(1)H-NMR, (1)H-NMR T(2)-edited, and 2D-NMR in bipolar disorder metabolic profiling
por: Sethi, Sumit, et al.
Publicado: (2017)

Singlet-assisted diffusion-NMR (SAD-NMR): extending the scope of diffusion tensor imaging via singlet NMR
por: Melchiorre, Giulia, et al.
Publicado: (2023)

NMR in cancer, XIII: application of the NMR malignancy index to human mammary tumours.
por: Goldsmith, M., et al.
Publicado: (1978)

WeBIAS: a web server for publishing bioinformatics applications
por: Daniluk, Paweł, et al.
Publicado: (2015)

Multidimensional NMR in liquids : basic principles and experimental methods /
por: Ven, Frank J. M. van de, 1953-
Publicado: (1995)

Cannot write session to /tmp/vufind_sessions/sess_i26g7k3pe2d65ju0mv8egno8ma