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Virtual Reference Environments: a simple way to make research reproducible

‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk spa...

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Detalles Bibliográficos
Autores principales: Hurley, Daniel G., Budden, David M., Crampin, Edmund J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570198/
https://www.ncbi.nlm.nih.gov/pubmed/25433467
http://dx.doi.org/10.1093/bib/bbu043
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author Hurley, Daniel G.
Budden, David M.
Crampin, Edmund J.
author_facet Hurley, Daniel G.
Budden, David M.
Crampin, Edmund J.
author_sort Hurley, Daniel G.
collection PubMed
description ‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk space, along with the availability of open-source and free-software licences for tools, enable another simple step to make research reproducible. In this article, we urge the creation of minimal virtual reference environments implementing all the tools necessary to reproduce a result, as a standard part of publication. We address potential problems with this approach, and show an example environment from our own work.
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spelling pubmed-45701982015-09-21 Virtual Reference Environments: a simple way to make research reproducible Hurley, Daniel G. Budden, David M. Crampin, Edmund J. Brief Bioinform Opinion Note ‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk space, along with the availability of open-source and free-software licences for tools, enable another simple step to make research reproducible. In this article, we urge the creation of minimal virtual reference environments implementing all the tools necessary to reproduce a result, as a standard part of publication. We address potential problems with this approach, and show an example environment from our own work. Oxford University Press 2015-09 2014-11-28 /pmc/articles/PMC4570198/ /pubmed/25433467 http://dx.doi.org/10.1093/bib/bbu043 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Opinion Note
Hurley, Daniel G.
Budden, David M.
Crampin, Edmund J.
Virtual Reference Environments: a simple way to make research reproducible
title Virtual Reference Environments: a simple way to make research reproducible
title_full Virtual Reference Environments: a simple way to make research reproducible
title_fullStr Virtual Reference Environments: a simple way to make research reproducible
title_full_unstemmed Virtual Reference Environments: a simple way to make research reproducible
title_short Virtual Reference Environments: a simple way to make research reproducible
title_sort virtual reference environments: a simple way to make research reproducible
topic Opinion Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570198/
https://www.ncbi.nlm.nih.gov/pubmed/25433467
http://dx.doi.org/10.1093/bib/bbu043
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