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Virtual Reference Environments: a simple way to make research reproducible
‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk spa...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570198/ https://www.ncbi.nlm.nih.gov/pubmed/25433467 http://dx.doi.org/10.1093/bib/bbu043 |
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author | Hurley, Daniel G. Budden, David M. Crampin, Edmund J. |
author_facet | Hurley, Daniel G. Budden, David M. Crampin, Edmund J. |
author_sort | Hurley, Daniel G. |
collection | PubMed |
description | ‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk space, along with the availability of open-source and free-software licences for tools, enable another simple step to make research reproducible. In this article, we urge the creation of minimal virtual reference environments implementing all the tools necessary to reproduce a result, as a standard part of publication. We address potential problems with this approach, and show an example environment from our own work. |
format | Online Article Text |
id | pubmed-4570198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-45701982015-09-21 Virtual Reference Environments: a simple way to make research reproducible Hurley, Daniel G. Budden, David M. Crampin, Edmund J. Brief Bioinform Opinion Note ‘Reproducible research’ has received increasing attention over the past few years as bioinformatics and computational biology methodologies become more complex. Although reproducible research is progressing in several valuable ways, we suggest that recent increases in internet bandwidth and disk space, along with the availability of open-source and free-software licences for tools, enable another simple step to make research reproducible. In this article, we urge the creation of minimal virtual reference environments implementing all the tools necessary to reproduce a result, as a standard part of publication. We address potential problems with this approach, and show an example environment from our own work. Oxford University Press 2015-09 2014-11-28 /pmc/articles/PMC4570198/ /pubmed/25433467 http://dx.doi.org/10.1093/bib/bbu043 Text en © The Author 2014. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Opinion Note Hurley, Daniel G. Budden, David M. Crampin, Edmund J. Virtual Reference Environments: a simple way to make research reproducible |
title | Virtual Reference Environments: a simple way to make research reproducible |
title_full | Virtual Reference Environments: a simple way to make research reproducible |
title_fullStr | Virtual Reference Environments: a simple way to make research reproducible |
title_full_unstemmed | Virtual Reference Environments: a simple way to make research reproducible |
title_short | Virtual Reference Environments: a simple way to make research reproducible |
title_sort | virtual reference environments: a simple way to make research reproducible |
topic | Opinion Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570198/ https://www.ncbi.nlm.nih.gov/pubmed/25433467 http://dx.doi.org/10.1093/bib/bbu043 |
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