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General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
[Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570253/ https://www.ncbi.nlm.nih.gov/pubmed/26413036 http://dx.doi.org/10.1021/acs.jctc.5b00267 |
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author | Wang, Qiantao Rackers, Joshua A. He, Chenfeng Qi, Rui Narth, Christophe Lagardere, Louis Gresh, Nohad Ponder, Jay W. Piquemal, Jean-Philip Ren, Pengyu |
author_facet | Wang, Qiantao Rackers, Joshua A. He, Chenfeng Qi, Rui Narth, Christophe Lagardere, Louis Gresh, Nohad Ponder, Jay W. Piquemal, Jean-Philip Ren, Pengyu |
author_sort | Wang, Qiantao |
collection | PubMed |
description | [Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short-range penetration effects can be significant and are essential for accurate modeling of intermolecular interactions. In this work we report parametrization of an empirical charge–charge function previously reported ( J.-P. Piquemal; J. Phys. Chem. A2003, 107, 1035326313624) to correct for the missing penetration term in standard molecular mechanics force fields. For this purpose, we have developed a database (S101×7) of 101 unique molecular dimers, each at 7 different intermolecular distances. Electrostatic, induction/polarization, repulsion, and dispersion energies, as well as the total interaction energy for each complex in the database are calculated using the SAPT2+ method ( T. M. Parker; J. Chem. Phys.2014, 140, 09410624606352). This empirical penetration model significantly improves agreement between point multipole and quantum mechanical electrostatic energies across the set of dimers and distances, while using only a limited set of parameters for each chemical element. Given the simplicity and effectiveness of the model, we expect the electrostatic penetration correction will become a standard component of future molecular mechanics force fields. |
format | Online Article Text |
id | pubmed-4570253 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-45702532016-04-28 General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field Wang, Qiantao Rackers, Joshua A. He, Chenfeng Qi, Rui Narth, Christophe Lagardere, Louis Gresh, Nohad Ponder, Jay W. Piquemal, Jean-Philip Ren, Pengyu J Chem Theory Comput [Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short-range penetration effects can be significant and are essential for accurate modeling of intermolecular interactions. In this work we report parametrization of an empirical charge–charge function previously reported ( J.-P. Piquemal; J. Phys. Chem. A2003, 107, 1035326313624) to correct for the missing penetration term in standard molecular mechanics force fields. For this purpose, we have developed a database (S101×7) of 101 unique molecular dimers, each at 7 different intermolecular distances. Electrostatic, induction/polarization, repulsion, and dispersion energies, as well as the total interaction energy for each complex in the database are calculated using the SAPT2+ method ( T. M. Parker; J. Chem. Phys.2014, 140, 09410624606352). This empirical penetration model significantly improves agreement between point multipole and quantum mechanical electrostatic energies across the set of dimers and distances, while using only a limited set of parameters for each chemical element. Given the simplicity and effectiveness of the model, we expect the electrostatic penetration correction will become a standard component of future molecular mechanics force fields. American Chemical Society 2015-04-28 2015-06-09 /pmc/articles/PMC4570253/ /pubmed/26413036 http://dx.doi.org/10.1021/acs.jctc.5b00267 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Wang, Qiantao Rackers, Joshua A. He, Chenfeng Qi, Rui Narth, Christophe Lagardere, Louis Gresh, Nohad Ponder, Jay W. Piquemal, Jean-Philip Ren, Pengyu General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field |
title | General Model for Treating Short-Range Electrostatic
Penetration in a Molecular Mechanics Force Field |
title_full | General Model for Treating Short-Range Electrostatic
Penetration in a Molecular Mechanics Force Field |
title_fullStr | General Model for Treating Short-Range Electrostatic
Penetration in a Molecular Mechanics Force Field |
title_full_unstemmed | General Model for Treating Short-Range Electrostatic
Penetration in a Molecular Mechanics Force Field |
title_short | General Model for Treating Short-Range Electrostatic
Penetration in a Molecular Mechanics Force Field |
title_sort | general model for treating short-range electrostatic
penetration in a molecular mechanics force field |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570253/ https://www.ncbi.nlm.nih.gov/pubmed/26413036 http://dx.doi.org/10.1021/acs.jctc.5b00267 |
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