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General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field

[Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short...

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Autores principales: Wang, Qiantao, Rackers, Joshua A., He, Chenfeng, Qi, Rui, Narth, Christophe, Lagardere, Louis, Gresh, Nohad, Ponder, Jay W., Piquemal, Jean-Philip, Ren, Pengyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2015
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570253/
https://www.ncbi.nlm.nih.gov/pubmed/26413036
http://dx.doi.org/10.1021/acs.jctc.5b00267
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author Wang, Qiantao
Rackers, Joshua A.
He, Chenfeng
Qi, Rui
Narth, Christophe
Lagardere, Louis
Gresh, Nohad
Ponder, Jay W.
Piquemal, Jean-Philip
Ren, Pengyu
author_facet Wang, Qiantao
Rackers, Joshua A.
He, Chenfeng
Qi, Rui
Narth, Christophe
Lagardere, Louis
Gresh, Nohad
Ponder, Jay W.
Piquemal, Jean-Philip
Ren, Pengyu
author_sort Wang, Qiantao
collection PubMed
description [Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short-range penetration effects can be significant and are essential for accurate modeling of intermolecular interactions. In this work we report parametrization of an empirical charge–charge function previously reported ( J.-P. Piquemal; J. Phys. Chem. A2003, 107, 1035326313624) to correct for the missing penetration term in standard molecular mechanics force fields. For this purpose, we have developed a database (S101×7) of 101 unique molecular dimers, each at 7 different intermolecular distances. Electrostatic, induction/polarization, repulsion, and dispersion energies, as well as the total interaction energy for each complex in the database are calculated using the SAPT2+ method ( T. M. Parker; J. Chem. Phys.2014, 140, 09410624606352). This empirical penetration model significantly improves agreement between point multipole and quantum mechanical electrostatic energies across the set of dimers and distances, while using only a limited set of parameters for each chemical element. Given the simplicity and effectiveness of the model, we expect the electrostatic penetration correction will become a standard component of future molecular mechanics force fields.
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spelling pubmed-45702532016-04-28 General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field Wang, Qiantao Rackers, Joshua A. He, Chenfeng Qi, Rui Narth, Christophe Lagardere, Louis Gresh, Nohad Ponder, Jay W. Piquemal, Jean-Philip Ren, Pengyu J Chem Theory Comput [Image: see text] Classical molecular mechanics force fields typically model interatomic electrostatic interactions with point charges or multipole expansions, which can fail for atoms in close contact due to the lack of a description of penetration effects between their electron clouds. These short-range penetration effects can be significant and are essential for accurate modeling of intermolecular interactions. In this work we report parametrization of an empirical charge–charge function previously reported ( J.-P. Piquemal; J. Phys. Chem. A2003, 107, 1035326313624) to correct for the missing penetration term in standard molecular mechanics force fields. For this purpose, we have developed a database (S101×7) of 101 unique molecular dimers, each at 7 different intermolecular distances. Electrostatic, induction/polarization, repulsion, and dispersion energies, as well as the total interaction energy for each complex in the database are calculated using the SAPT2+ method ( T. M. Parker; J. Chem. Phys.2014, 140, 09410624606352). This empirical penetration model significantly improves agreement between point multipole and quantum mechanical electrostatic energies across the set of dimers and distances, while using only a limited set of parameters for each chemical element. Given the simplicity and effectiveness of the model, we expect the electrostatic penetration correction will become a standard component of future molecular mechanics force fields. American Chemical Society 2015-04-28 2015-06-09 /pmc/articles/PMC4570253/ /pubmed/26413036 http://dx.doi.org/10.1021/acs.jctc.5b00267 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Wang, Qiantao
Rackers, Joshua A.
He, Chenfeng
Qi, Rui
Narth, Christophe
Lagardere, Louis
Gresh, Nohad
Ponder, Jay W.
Piquemal, Jean-Philip
Ren, Pengyu
General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title_full General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title_fullStr General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title_full_unstemmed General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title_short General Model for Treating Short-Range Electrostatic Penetration in a Molecular Mechanics Force Field
title_sort general model for treating short-range electrostatic penetration in a molecular mechanics force field
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570253/
https://www.ncbi.nlm.nih.gov/pubmed/26413036
http://dx.doi.org/10.1021/acs.jctc.5b00267
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