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Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images
BACKGROUND: The efficacy of histological analysis of colon sections used for evaluation of inflammation severity can be improved by means of digital imaging giving quantitative estimates of main diagnostic features. The aim of this study was to reveal most valuable diagnostic features reflecting inf...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570696/ https://www.ncbi.nlm.nih.gov/pubmed/26370784 http://dx.doi.org/10.1186/s13000-015-0389-7 |
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author | Petrolis, Robertas Ramonaitė, Rima Jančiauskas, Dainius Kupčinskas, Juozas Pečiulis, Rokas Kupčinskas, Limas Kriščiukaitis, Algimantas |
author_facet | Petrolis, Robertas Ramonaitė, Rima Jančiauskas, Dainius Kupčinskas, Juozas Pečiulis, Rokas Kupčinskas, Limas Kriščiukaitis, Algimantas |
author_sort | Petrolis, Robertas |
collection | PubMed |
description | BACKGROUND: The efficacy of histological analysis of colon sections used for evaluation of inflammation severity can be improved by means of digital imaging giving quantitative estimates of main diagnostic features. The aim of this study was to reveal most valuable diagnostic features reflecting inflammation severity in colon and elaborate the evaluation method for computer-aided diagnostics. METHODS: Tissue specimens from 24 BALB/c mice and 15 patients were included in the study. Chronic and acute colon inflammation in mice was induced by oral administration of dextran sulphate sodium (DSS) solution, while mice in the control group did not get DSS. Human samples of inflamed colon tissue were obtained from patients with ulcerative colitis (n = 6). Non-inflamed colon tissue of control subjects (n = 9) was obtained from patients with irritable bowel syndrome or functional obstipation. Analysis of morphological changes in mice and human colon mucosa was performed using 4-μm haematoxylin-eosin (HE) sections. The features reflecting morphological changes in the images of colon mucosa were calculated by convolution of Gabor filter bank and array of pixel values. All features were generalized by calculating mean, histogram skewness and entropy of every image response. Principal component analysis was used to construct optimal representation of morphological changes. RESULTS: First principal component (PC1) was representing the major part of features variation (97 % in mice and 71 % in human specimens) and was selected as a measure of inflammation severity. Validation of new measure was performed by means of custom-made software realizing double blind comparison of differences in PC1 with expert’s opinion about inflammation severity presented in two compared pictures. Overall accuracy of 80 % for mice and 67 % for human was reached. CONCLUSION: Principal component analysis of spatial frequency features of histological images may provide continuous scale estimation of inflammation severity of colon tissue. |
format | Online Article Text |
id | pubmed-4570696 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45706962015-09-16 Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images Petrolis, Robertas Ramonaitė, Rima Jančiauskas, Dainius Kupčinskas, Juozas Pečiulis, Rokas Kupčinskas, Limas Kriščiukaitis, Algimantas Diagn Pathol Research BACKGROUND: The efficacy of histological analysis of colon sections used for evaluation of inflammation severity can be improved by means of digital imaging giving quantitative estimates of main diagnostic features. The aim of this study was to reveal most valuable diagnostic features reflecting inflammation severity in colon and elaborate the evaluation method for computer-aided diagnostics. METHODS: Tissue specimens from 24 BALB/c mice and 15 patients were included in the study. Chronic and acute colon inflammation in mice was induced by oral administration of dextran sulphate sodium (DSS) solution, while mice in the control group did not get DSS. Human samples of inflamed colon tissue were obtained from patients with ulcerative colitis (n = 6). Non-inflamed colon tissue of control subjects (n = 9) was obtained from patients with irritable bowel syndrome or functional obstipation. Analysis of morphological changes in mice and human colon mucosa was performed using 4-μm haematoxylin-eosin (HE) sections. The features reflecting morphological changes in the images of colon mucosa were calculated by convolution of Gabor filter bank and array of pixel values. All features were generalized by calculating mean, histogram skewness and entropy of every image response. Principal component analysis was used to construct optimal representation of morphological changes. RESULTS: First principal component (PC1) was representing the major part of features variation (97 % in mice and 71 % in human specimens) and was selected as a measure of inflammation severity. Validation of new measure was performed by means of custom-made software realizing double blind comparison of differences in PC1 with expert’s opinion about inflammation severity presented in two compared pictures. Overall accuracy of 80 % for mice and 67 % for human was reached. CONCLUSION: Principal component analysis of spatial frequency features of histological images may provide continuous scale estimation of inflammation severity of colon tissue. BioMed Central 2015-09-15 /pmc/articles/PMC4570696/ /pubmed/26370784 http://dx.doi.org/10.1186/s13000-015-0389-7 Text en © Petrolis et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Petrolis, Robertas Ramonaitė, Rima Jančiauskas, Dainius Kupčinskas, Juozas Pečiulis, Rokas Kupčinskas, Limas Kriščiukaitis, Algimantas Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title | Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title_full | Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title_fullStr | Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title_full_unstemmed | Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title_short | Digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
title_sort | digital imaging of colon tissue: method for evaluation of inflammation severity by spatial frequency features of the histological images |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570696/ https://www.ncbi.nlm.nih.gov/pubmed/26370784 http://dx.doi.org/10.1186/s13000-015-0389-7 |
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