Cargando…

A close look at protein function prediction evaluation protocols

BACKGROUND: The recently held Critical Assessment of Function Annotation challenge (CAFA2) required its participants to submit predictions for a large number of target proteins regardless of whether they have previous annotations or not. This is in contrast to the original CAFA challenge in which pa...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kahanda, Indika, Funk, Christopher S, Ullah, Fahad, Verspoor, Karin M, Ben-Hur, Asa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4570743/ https://www.ncbi.nlm.nih.gov/pubmed/26380075 http://dx.doi.org/10.1186/s13742-015-0082-5

Ejemplares similares

Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct
por: Funk, Christopher S, et al.
Publicado: (2015)

PHENOstruct: Prediction of human phenotype ontology terms using heterogeneous data sources
por: Kahanda, Indika, et al.
Publicado: (2015)

Combining heterogeneous data sources for accurate functional annotation of proteins
por: Sokolov, Artem, et al.
Publicado: (2013)

Deep semi-supervised learning ensemble framework for classifying co-mentions of human proteins and phenotypes
por: Pourreza Shahri, Morteza, et al.
Publicado: (2021)

Computational methods for the ab initio identification of novel microRNA in plants: a systematic review
por: Manuweera, Buwani, et al.
Publicado: (2019)

A self-attention model for inferring cooperativity between regulatory features
por: Ullah, Fahad, et al.
Publicado: (2021)

Challenges and opportunities in current vaccine technology and administration: A comprehensive survey examining oral vaccine potential in the United States
por: Rupassara, S. Indu, et al.
Publicado: (2022)

Choosing negative examples for the prediction of protein-protein interactions
por: Ben-Hur, Asa, et al.
Publicado: (2006)

Text Mining Improves Prediction of Protein Functional Sites
por: Verspoor, Karin M., et al.
Publicado: (2012)

Stefan Westermann: A close look at kinetochore function
por: Sedwick, Caitlin
Publicado: (2007)

A close look at cornea
por: Natarajan, Sundaram
Publicado: (2014)

Exploring the relationship between intron retention and chromatin accessibility in plants
por: Ullah, Fahad, et al.
Publicado: (2018)

A close look at cerebellar learning
por: Dove, Alan W.
Publicado: (2003)

GAO Takes a Close Look at
Publicado: (1995)

Closing remarks and a look to the future
por: Gianotti, Fabiola
Publicado: (2022)

Taking a close look at electrosensing
por: Sharpee, Tatyana O
Publicado: (2016)

Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum (Sorghum bicolor) Genotypes in Response to PEG-Induced Drought Stress
por: Abdel-Ghany, Salah E., et al.
Publicado: (2020)

Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention
por: Ullah, Fahad, et al.
Publicado: (2023)

Protein quality assessment with a loss function designed for high-quality decoys
por: Roy, Soumyadip, et al.
Publicado: (2023)

A Close Look at Hearing Repair, One Protein at a Time
por: Robinson, Richard
Publicado: (2013)

One for All, All for One: A Close Look at In-Resin Fluorescence Protocols for CLEM
por: Heiligenstein, Xavier, et al.
Publicado: (2022)

Comprehensive evaluation of deep learning architectures for prediction of DNA/RNA sequence binding specificities
por: Trabelsi, Ameni, et al.
Publicado: (2019)

Evaluating the dose, indication and agreement with guidelines of antimicrobial use in companion animal practice with natural language processing
por: Hur, Brian, et al.
Publicado: (2022)

Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition
por: Funk, Christopher S., et al.
Publicado: (2016)

Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters
por: Funk, Christopher, et al.
Publicado: (2014)

A close look at the world’s largest astronomical project
por: Catapano, Paola, et al.
Publicado: (2015)

It’s time to look more closely at RYR3
por: Sedwick, Caitlin
Publicado: (2019)

A close look at current γδ T-cell immunotherapy
por: Ma, Ling, et al.
Publicado: (2023)

On the choice of negative examples for prediction of host-pathogen protein interactions
por: Neumann, Don, et al.
Publicado: (2022)

Overview of the BioCreative VI text-mining services for Kinome Curation Track
por: Gobeill, Julien, et al.
Publicado: (2018)

Value for money in attending conferences: Need to look more closely
por: Walsh, Kieran
Publicado: (2014)

Meeting report: a close look at oral biofilms and microbiomes
por: Xu, Xin, et al.
Publicado: (2018)

Taking a close look at a large-pore channel
por: Gaete, Pablo S, et al.
Publicado: (2020)

An expanded evaluation of protein function prediction methods shows an improvement in accuracy
por: Jiang, Yuxiang, et al.
Publicado: (2016)

aPPRove: An HMM-Based Method for Accurate Prediction of RNA-Pentatricopeptide Repeat Protein Binding Events
por: Harrison, Thomas, et al.
Publicado: (2016)

Protein-Water and Water-Water Long-Time Relaxations in Protein Hydration Water upon Cooling—A Close Look through Density Correlation Functions
por: Tenuzzo, Lorenzo, et al.
Publicado: (2020)

A large-scale evaluation of computational protein function prediction
por: Radivojac, Predrag, et al.
Publicado: (2013)

Towards a Semantic Lexicon for Biological Language Processing
por: Verspoor, Karin
Publicado: (2005)

The Evolution of Clinical Knowledge During COVID-19: Towards a Global Learning Health System
por: Verspoor, Karin
Publicado: (2021)

Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes
por: Liu, Jinghui, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_3n8dgbgufdpqkpvpe3d73p55pd