Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood

An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophil...

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Autores principales: Lee, Hae-Won, Kim, Dae-Won, Lee, Mi-Hwa, Kim, Byung-Yong, Cho, Yong-Joon, Yim, Kyung June, Song, Hye Seon, Rhee, Jin-Kyu, Seo, Myung-Ji, Choi, Hak-Jong, Choi, Jong-Soon, Lee, Dong-Gi, Yoon, Changmann, Nam, Young-Do, Roh, Seong Woon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571117/
https://www.ncbi.nlm.nih.gov/pubmed/26380039
http://dx.doi.org/10.1186/s40793-015-0051-8
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author Lee, Hae-Won
Kim, Dae-Won
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Yim, Kyung June
Song, Hye Seon
Rhee, Jin-Kyu
Seo, Myung-Ji
Choi, Hak-Jong
Choi, Jong-Soon
Lee, Dong-Gi
Yoon, Changmann
Nam, Young-Do
Roh, Seong Woon
author_facet Lee, Hae-Won
Kim, Dae-Won
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Yim, Kyung June
Song, Hye Seon
Rhee, Jin-Kyu
Seo, Myung-Ji
Choi, Hak-Jong
Choi, Jong-Soon
Lee, Dong-Gi
Yoon, Changmann
Nam, Young-Do
Roh, Seong Woon
author_sort Lee, Hae-Won
collection PubMed
description An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43(T). The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76 %.
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spelling pubmed-45711172015-09-17 Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood Lee, Hae-Won Kim, Dae-Won Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Yim, Kyung June Song, Hye Seon Rhee, Jin-Kyu Seo, Myung-Ji Choi, Hak-Jong Choi, Jong-Soon Lee, Dong-Gi Yoon, Changmann Nam, Young-Do Roh, Seong Woon Stand Genomic Sci Short Genome Report An extremely halophilic archaeon, Haladaptatus cibarius D43(T), was isolated from traditional Korean salt-rich fermented seafood. Strain D43(T) shows the highest 16S rRNA gene sequence similarity (98.7 %) with Haladaptatus litoreus RO1-28(T), is Gram-negative staining, motile, and extremely halophilic. Despite potential industrial applications of extremely halophilic archaea, their genome characteristics remain obscure. Here, we describe the whole genome sequence and annotated features of strain D43(T). The 3,926,724 bp genome includes 4,092 protein-coding and 57 RNA genes (including 6 rRNA and 49 tRNA genes) with an average G + C content of 57.76 %. BioMed Central 2015-08-13 /pmc/articles/PMC4571117/ /pubmed/26380039 http://dx.doi.org/10.1186/s40793-015-0051-8 Text en © Lee et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Lee, Hae-Won
Kim, Dae-Won
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Yim, Kyung June
Song, Hye Seon
Rhee, Jin-Kyu
Seo, Myung-Ji
Choi, Hak-Jong
Choi, Jong-Soon
Lee, Dong-Gi
Yoon, Changmann
Nam, Young-Do
Roh, Seong Woon
Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title_full Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title_fullStr Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title_full_unstemmed Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title_short Draft genome sequence of the extremely halophilic archaeon Haladaptatus cibarius type strain D43(T) isolated from fermented seafood
title_sort draft genome sequence of the extremely halophilic archaeon haladaptatus cibarius type strain d43(t) isolated from fermented seafood
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571117/
https://www.ncbi.nlm.nih.gov/pubmed/26380039
http://dx.doi.org/10.1186/s40793-015-0051-8
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