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High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and an...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571121/ https://www.ncbi.nlm.nih.gov/pubmed/26380037 http://dx.doi.org/10.1186/s40793-015-0007-z |
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author | Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed Baeshen, Nabih Kyrpides, Nikos Reeve, Wayne |
author_facet | Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed Baeshen, Nabih Kyrpides, Nikos Reeve, Wayne |
author_sort | Tian, Rui |
collection | PubMed |
description | Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0007-z) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4571121 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45711212015-09-17 High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed Baeshen, Nabih Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0007-z) contains supplementary material, which is available to authorized users. BioMed Central 2015-06-14 /pmc/articles/PMC4571121/ /pubmed/26380037 http://dx.doi.org/10.1186/s40793-015-0007-z Text en © Tian et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed Baeshen, Nabih Kyrpides, Nikos Reeve, Wayne High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title | High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title_full | High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title_fullStr | High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title_full_unstemmed | High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title_short | High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica |
title_sort | high-quality permanent draft genome sequence of bradyrhizobium sp. ai1a-2; a microsymbiont of andira inermis discovered in costa rica |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571121/ https://www.ncbi.nlm.nih.gov/pubmed/26380037 http://dx.doi.org/10.1186/s40793-015-0007-z |
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