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High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica

Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and an...

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Autores principales: Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed, Baeshen, Nabih, Kyrpides, Nikos, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571121/
https://www.ncbi.nlm.nih.gov/pubmed/26380037
http://dx.doi.org/10.1186/s40793-015-0007-z
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author Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed
Baeshen, Nabih
Kyrpides, Nikos
Reeve, Wayne
author_facet Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed
Baeshen, Nabih
Kyrpides, Nikos
Reeve, Wayne
author_sort Tian, Rui
collection PubMed
description Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0007-z) contains supplementary material, which is available to authorized users.
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spelling pubmed-45711212015-09-17 High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica Tian, Rui Parker, Matthew Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Baeshen, Mohammed Baeshen, Nabih Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Piedras in Costa Rica. In this report we describe, for the first time, the genome sequence information and annotation of this legume microsymbiont. The 9,029,266 bp genome has a GC content of 62.56% with 247 contigs arranged into 246 scaffolds. The assembled genome contains 8,482 protein-coding genes and 102 RNA-only encoding genes. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project proposal. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0007-z) contains supplementary material, which is available to authorized users. BioMed Central 2015-06-14 /pmc/articles/PMC4571121/ /pubmed/26380037 http://dx.doi.org/10.1186/s40793-015-0007-z Text en © Tian et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Tian, Rui
Parker, Matthew
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Baeshen, Mohammed
Baeshen, Nabih
Kyrpides, Nikos
Reeve, Wayne
High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title_full High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title_fullStr High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title_full_unstemmed High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title_short High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica
title_sort high-quality permanent draft genome sequence of bradyrhizobium sp. ai1a-2; a microsymbiont of andira inermis discovered in costa rica
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4571121/
https://www.ncbi.nlm.nih.gov/pubmed/26380037
http://dx.doi.org/10.1186/s40793-015-0007-z
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