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Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) Na...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572444/ https://www.ncbi.nlm.nih.gov/pubmed/26380637 http://dx.doi.org/10.1186/s40793-015-0047-4 |
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author | Cha, In-Tae Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Kim, Dae-Won Yim, Kyung June Song, Hye Seon Seo, Myung-Ji Rhee, Jin-Kyu Choi, Jong-Soon Choi, Hak-Jong Yoon, Changmann Roh, Seong Woon Nam, Young-Do |
author_facet | Cha, In-Tae Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Kim, Dae-Won Yim, Kyung June Song, Hye Seon Seo, Myung-Ji Rhee, Jin-Kyu Choi, Jong-Soon Choi, Hak-Jong Yoon, Changmann Roh, Seong Woon Nam, Young-Do |
author_sort | Cha, In-Tae |
collection | PubMed |
description | Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) NaCl. We present the annotated H. jeotgali A29(T) genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9 % comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment. |
format | Online Article Text |
id | pubmed-4572444 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45724442015-09-18 Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food Cha, In-Tae Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Kim, Dae-Won Yim, Kyung June Song, Hye Seon Seo, Myung-Ji Rhee, Jin-Kyu Choi, Jong-Soon Choi, Hak-Jong Yoon, Changmann Roh, Seong Woon Nam, Young-Do Stand Genomic Sci Short Genome Report Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) NaCl. We present the annotated H. jeotgali A29(T) genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9 % comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment. BioMed Central 2015-08-05 /pmc/articles/PMC4572444/ /pubmed/26380637 http://dx.doi.org/10.1186/s40793-015-0047-4 Text en © Cha et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Cha, In-Tae Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Kim, Dae-Won Yim, Kyung June Song, Hye Seon Seo, Myung-Ji Rhee, Jin-Kyu Choi, Jong-Soon Choi, Hak-Jong Yoon, Changmann Roh, Seong Woon Nam, Young-Do Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title | Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title_full | Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title_fullStr | Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title_full_unstemmed | Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title_short | Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food |
title_sort | genome sequence of the haloarchaeon haloterrigena jeotgali type strain a29(t) isolated from salt-fermented food |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572444/ https://www.ncbi.nlm.nih.gov/pubmed/26380637 http://dx.doi.org/10.1186/s40793-015-0047-4 |
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