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Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food

Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) Na...

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Autores principales: Cha, In-Tae, Lee, Mi-Hwa, Kim, Byung-Yong, Cho, Yong-Joon, Kim, Dae-Won, Yim, Kyung June, Song, Hye Seon, Seo, Myung-Ji, Rhee, Jin-Kyu, Choi, Jong-Soon, Choi, Hak-Jong, Yoon, Changmann, Roh, Seong Woon, Nam, Young-Do
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572444/
https://www.ncbi.nlm.nih.gov/pubmed/26380637
http://dx.doi.org/10.1186/s40793-015-0047-4
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author Cha, In-Tae
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Kim, Dae-Won
Yim, Kyung June
Song, Hye Seon
Seo, Myung-Ji
Rhee, Jin-Kyu
Choi, Jong-Soon
Choi, Hak-Jong
Yoon, Changmann
Roh, Seong Woon
Nam, Young-Do
author_facet Cha, In-Tae
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Kim, Dae-Won
Yim, Kyung June
Song, Hye Seon
Seo, Myung-Ji
Rhee, Jin-Kyu
Choi, Jong-Soon
Choi, Hak-Jong
Yoon, Changmann
Roh, Seong Woon
Nam, Young-Do
author_sort Cha, In-Tae
collection PubMed
description Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) NaCl. We present the annotated H. jeotgali A29(T) genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9 % comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment.
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spelling pubmed-45724442015-09-18 Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food Cha, In-Tae Lee, Mi-Hwa Kim, Byung-Yong Cho, Yong-Joon Kim, Dae-Won Yim, Kyung June Song, Hye Seon Seo, Myung-Ji Rhee, Jin-Kyu Choi, Jong-Soon Choi, Hak-Jong Yoon, Changmann Roh, Seong Woon Nam, Young-Do Stand Genomic Sci Short Genome Report Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29(T) is the type strain of H. jeotgali, and is a Gram-negative staining, non-motile, rod-shaped archaeon that grows in 10 %–30 % (w/v) NaCl. We present the annotated H. jeotgali A29(T) genome sequence along with a summary of its features. The 4,131,621 bp genome with a GC content of 64.9 % comprises 4,215 protein-coding genes and 127 RNA genes. The sequence can provide useful information on genetic mechanisms that enable haloarchaea to endure a hypersaline environment. BioMed Central 2015-08-05 /pmc/articles/PMC4572444/ /pubmed/26380637 http://dx.doi.org/10.1186/s40793-015-0047-4 Text en © Cha et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Cha, In-Tae
Lee, Mi-Hwa
Kim, Byung-Yong
Cho, Yong-Joon
Kim, Dae-Won
Yim, Kyung June
Song, Hye Seon
Seo, Myung-Ji
Rhee, Jin-Kyu
Choi, Jong-Soon
Choi, Hak-Jong
Yoon, Changmann
Roh, Seong Woon
Nam, Young-Do
Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title_full Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title_fullStr Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title_full_unstemmed Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title_short Genome sequence of the haloarchaeon Haloterrigena jeotgali type strain A29(T) isolated from salt-fermented food
title_sort genome sequence of the haloarchaeon haloterrigena jeotgali type strain a29(t) isolated from salt-fermented food
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572444/
https://www.ncbi.nlm.nih.gov/pubmed/26380637
http://dx.doi.org/10.1186/s40793-015-0047-4
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