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Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group
Loktanella hongkongensis UST950701-009P(T) is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorpho...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572655/ https://www.ncbi.nlm.nih.gov/pubmed/26380639 http://dx.doi.org/10.1186/s40793-015-0050-9 |
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author | Lau, Stanley CK Riedel, Thomas Fiebig, Anne Han, James Huntemann, Marcel Petersen, Jörn Ivanova, Natalia N. Markowitz, Victor Woyke, Tanja Göker, Markus Kyrpides, Nikos C. Klenk, Hans-Peter Qian, Pei-Yuan |
author_facet | Lau, Stanley CK Riedel, Thomas Fiebig, Anne Han, James Huntemann, Marcel Petersen, Jörn Ivanova, Natalia N. Markowitz, Victor Woyke, Tanja Göker, Markus Kyrpides, Nikos C. Klenk, Hans-Peter Qian, Pei-Yuan |
author_sort | Lau, Stanley CK |
collection | PubMed |
description | Loktanella hongkongensis UST950701-009P(T) is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorphosis of a ubiquitous polychaete tubeworm Hydroides elegans. The inductive cues are low-molecular weight compounds bound to the exopolymeric matrix of the bacterial cells. In the present study we describe the features of L. hongkongensis strain DSM 17492(T) together with its genome sequence and annotation and novel aspects of its phenotype. The 3,198,444 bp long genome sequence encodes 3104 protein-coding genes and 57 RNA genes. The two unambiguously identified extrachromosomal replicons contain replication modules of the RepB and the Rhodobacteraceae-specific DnaA-like type, respectively. |
format | Online Article Text |
id | pubmed-4572655 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45726552015-09-18 Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group Lau, Stanley CK Riedel, Thomas Fiebig, Anne Han, James Huntemann, Marcel Petersen, Jörn Ivanova, Natalia N. Markowitz, Victor Woyke, Tanja Göker, Markus Kyrpides, Nikos C. Klenk, Hans-Peter Qian, Pei-Yuan Stand Genomic Sci Short Genome Report Loktanella hongkongensis UST950701-009P(T) is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a monospecies biofilm on polystyrene surfaces, this bacterium is able to induce larval settlement and metamorphosis of a ubiquitous polychaete tubeworm Hydroides elegans. The inductive cues are low-molecular weight compounds bound to the exopolymeric matrix of the bacterial cells. In the present study we describe the features of L. hongkongensis strain DSM 17492(T) together with its genome sequence and annotation and novel aspects of its phenotype. The 3,198,444 bp long genome sequence encodes 3104 protein-coding genes and 57 RNA genes. The two unambiguously identified extrachromosomal replicons contain replication modules of the RepB and the Rhodobacteraceae-specific DnaA-like type, respectively. BioMed Central 2015-08-11 /pmc/articles/PMC4572655/ /pubmed/26380639 http://dx.doi.org/10.1186/s40793-015-0050-9 Text en © Lau et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Lau, Stanley CK Riedel, Thomas Fiebig, Anne Han, James Huntemann, Marcel Petersen, Jörn Ivanova, Natalia N. Markowitz, Victor Woyke, Tanja Göker, Markus Kyrpides, Nikos C. Klenk, Hans-Peter Qian, Pei-Yuan Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title | Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title_full | Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title_fullStr | Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title_full_unstemmed | Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title_short | Genome sequence of the pink–pigmented marine bacterium Loktanella hongkongensis type strain (UST950701–009P(T)), a representative of the Roseobacter group |
title_sort | genome sequence of the pink–pigmented marine bacterium loktanella hongkongensis type strain (ust950701–009p(t)), a representative of the roseobacter group |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572655/ https://www.ncbi.nlm.nih.gov/pubmed/26380639 http://dx.doi.org/10.1186/s40793-015-0050-9 |
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