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High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea

Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft geno...

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Autores principales: Ntougias, Spyridon, Lapidus, Alla, Copeland, Alex, Reddy, T. B. K., Pati, Amrita, Ivanova, Natalia N., Markowitz, Victor M., Klenk, Hans-Peter, Woyke, Tanja, Fasseas, Constantinos, Kyrpides, Nikos C., Zervakis, Georgios I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572670/
https://www.ncbi.nlm.nih.gov/pubmed/26380640
http://dx.doi.org/10.1186/s40793-015-0052-7
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author Ntougias, Spyridon
Lapidus, Alla
Copeland, Alex
Reddy, T. B. K.
Pati, Amrita
Ivanova, Natalia N.
Markowitz, Victor M.
Klenk, Hans-Peter
Woyke, Tanja
Fasseas, Constantinos
Kyrpides, Nikos C.
Zervakis, Georgios I.
author_facet Ntougias, Spyridon
Lapidus, Alla
Copeland, Alex
Reddy, T. B. K.
Pati, Amrita
Ivanova, Natalia N.
Markowitz, Victor M.
Klenk, Hans-Peter
Woyke, Tanja
Fasseas, Constantinos
Kyrpides, Nikos C.
Zervakis, Georgios I.
author_sort Ntougias, Spyridon
collection PubMed
description Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7(T) are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7(T) encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. An emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain.
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spelling pubmed-45726702015-09-18 High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea Ntougias, Spyridon Lapidus, Alla Copeland, Alex Reddy, T. B. K. Pati, Amrita Ivanova, Natalia N. Markowitz, Victor M. Klenk, Hans-Peter Woyke, Tanja Fasseas, Constantinos Kyrpides, Nikos C. Zervakis, Georgios I. Stand Genomic Sci Short Genome Report Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7(T) are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7(T) encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. An emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain. BioMed Central 2015-08-13 /pmc/articles/PMC4572670/ /pubmed/26380640 http://dx.doi.org/10.1186/s40793-015-0052-7 Text en © Ntougias et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Ntougias, Spyridon
Lapidus, Alla
Copeland, Alex
Reddy, T. B. K.
Pati, Amrita
Ivanova, Natalia N.
Markowitz, Victor M.
Klenk, Hans-Peter
Woyke, Tanja
Fasseas, Constantinos
Kyrpides, Nikos C.
Zervakis, Georgios I.
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title_full High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title_fullStr High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title_full_unstemmed High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title_short High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
title_sort high-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium halotalea alkalilenta aw-7(t), and emended description of the genus halotalea
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572670/
https://www.ncbi.nlm.nih.gov/pubmed/26380640
http://dx.doi.org/10.1186/s40793-015-0052-7
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