Cargando…
High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea
Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft geno...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572670/ https://www.ncbi.nlm.nih.gov/pubmed/26380640 http://dx.doi.org/10.1186/s40793-015-0052-7 |
_version_ | 1782390428493938688 |
---|---|
author | Ntougias, Spyridon Lapidus, Alla Copeland, Alex Reddy, T. B. K. Pati, Amrita Ivanova, Natalia N. Markowitz, Victor M. Klenk, Hans-Peter Woyke, Tanja Fasseas, Constantinos Kyrpides, Nikos C. Zervakis, Georgios I. |
author_facet | Ntougias, Spyridon Lapidus, Alla Copeland, Alex Reddy, T. B. K. Pati, Amrita Ivanova, Natalia N. Markowitz, Victor M. Klenk, Hans-Peter Woyke, Tanja Fasseas, Constantinos Kyrpides, Nikos C. Zervakis, Georgios I. |
author_sort | Ntougias, Spyridon |
collection | PubMed |
description | Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7(T) are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7(T) encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. An emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain. |
format | Online Article Text |
id | pubmed-4572670 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45726702015-09-18 High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea Ntougias, Spyridon Lapidus, Alla Copeland, Alex Reddy, T. B. K. Pati, Amrita Ivanova, Natalia N. Markowitz, Victor M. Klenk, Hans-Peter Woyke, Tanja Fasseas, Constantinos Kyrpides, Nikos C. Zervakis, Georgios I. Stand Genomic Sci Short Genome Report Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the degradation of industrial effluents. Here, the characteristics and the permanent-draft genome sequence and annotation of Halotalea alkalilenta AW-7(T) are described. The microorganism was sequenced as a part of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project at the DOE Joint Genome Institute, and it is the only strain within the genus Halotalea having its genome sequenced. The genome is 4,467,826 bp long and consists of 40 scaffolds with 64.62 % average GC content. A total of 4,104 genes were predicted, comprising of 4,028 protein-coding and 76 RNA genes. Most protein-coding genes (87.79 %) were assigned to a putative function. Halotalea alkalilenta AW-7(T) encodes the catechol and protocatechuate degradation to β-ketoadipate via the β-ketoadipate and protocatechuate ortho-cleavage degradation pathway, and it possesses the genetic ability to detoxify fluoroacetate, cyanate and acrylonitrile. An emended description of the genus Halotalea Ntougias et al. 2007 is also provided in order to describe the delayed fermentation ability of the type strain. BioMed Central 2015-08-13 /pmc/articles/PMC4572670/ /pubmed/26380640 http://dx.doi.org/10.1186/s40793-015-0052-7 Text en © Ntougias et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Ntougias, Spyridon Lapidus, Alla Copeland, Alex Reddy, T. B. K. Pati, Amrita Ivanova, Natalia N. Markowitz, Victor M. Klenk, Hans-Peter Woyke, Tanja Fasseas, Constantinos Kyrpides, Nikos C. Zervakis, Georgios I. High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title_full | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title_fullStr | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title_full_unstemmed | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title_short | High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7(T), and emended description of the genus Halotalea |
title_sort | high-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium halotalea alkalilenta aw-7(t), and emended description of the genus halotalea |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572670/ https://www.ncbi.nlm.nih.gov/pubmed/26380640 http://dx.doi.org/10.1186/s40793-015-0052-7 |
work_keys_str_mv | AT ntougiasspyridon highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT lapidusalla highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT copelandalex highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT reddytbk highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT patiamrita highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT ivanovanatalian highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT markowitzvictorm highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT klenkhanspeter highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT woyketanja highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT fasseasconstantinos highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT kyrpidesnikosc highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea AT zervakisgeorgiosi highqualitypermanentdraftgenomesequenceoftheextremelyosmotolerantdiphenoldegradingbacteriumhalotaleaalkalilentaaw7tandemendeddescriptionofthegenushalotalea |