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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb hi...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572675/ https://www.ncbi.nlm.nih.gov/pubmed/26380646 http://dx.doi.org/10.1186/s40793-015-0043-8 |
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author | Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien |
author_facet | Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien |
author_sort | Goordial, Jacqueline |
collection | PubMed |
description | The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0043-8) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4572675 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45726752015-09-18 Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien Stand Genomic Sci Short Genome Report The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0043-8) contains supplementary material, which is available to authorized users. BioMed Central 2015-09-03 /pmc/articles/PMC4572675/ /pubmed/26380646 http://dx.doi.org/10.1186/s40793-015-0043-8 Text en © Goordial et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title | Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title_full | Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title_fullStr | Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title_full_unstemmed | Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title_short | Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost |
title_sort | improved-high-quality draft genome sequence of rhodococcus sp. jg-3, a eurypsychrophilic actinobacteria from antarctic dry valley permafrost |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572675/ https://www.ncbi.nlm.nih.gov/pubmed/26380646 http://dx.doi.org/10.1186/s40793-015-0043-8 |
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