Cargando…

Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost

The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb hi...

Descripción completa

Detalles Bibliográficos
Autores principales: Goordial, Jacqueline, Raymond-Bouchard, Isabelle, Ronholm, Jennifer, Shapiro, Nicole, Woyke, Tanja, Whyte, Lyle, Bakermans, Corien
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572675/
https://www.ncbi.nlm.nih.gov/pubmed/26380646
http://dx.doi.org/10.1186/s40793-015-0043-8
_version_ 1782390429666246656
author Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
author_facet Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
author_sort Goordial, Jacqueline
collection PubMed
description The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0043-8) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-4572675
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-45726752015-09-18 Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost Goordial, Jacqueline Raymond-Bouchard, Isabelle Ronholm, Jennifer Shapiro, Nicole Woyke, Tanja Whyte, Lyle Bakermans, Corien Stand Genomic Sci Short Genome Report The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderately halotolerant and capable of growth from 30 °C down to at least −5 °C. The 5.28 Mb high-quality-draft genome is arranged into 6 scaffolds, containing 9 contigs and 4998 protein coding genes, with 64 % GC content. Increasing the availability of genome sequences from cold-adapted species is crucial to gaining a better understanding of the molecular traits of cold adaptation in microbes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0043-8) contains supplementary material, which is available to authorized users. BioMed Central 2015-09-03 /pmc/articles/PMC4572675/ /pubmed/26380646 http://dx.doi.org/10.1186/s40793-015-0043-8 Text en © Goordial et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Goordial, Jacqueline
Raymond-Bouchard, Isabelle
Ronholm, Jennifer
Shapiro, Nicole
Woyke, Tanja
Whyte, Lyle
Bakermans, Corien
Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_full Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_fullStr Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_full_unstemmed Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_short Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
title_sort improved-high-quality draft genome sequence of rhodococcus sp. jg-3, a eurypsychrophilic actinobacteria from antarctic dry valley permafrost
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4572675/
https://www.ncbi.nlm.nih.gov/pubmed/26380646
http://dx.doi.org/10.1186/s40793-015-0043-8
work_keys_str_mv AT goordialjacqueline improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT raymondbouchardisabelle improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT ronholmjennifer improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT shapironicole improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT woyketanja improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT whytelyle improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost
AT bakermanscorien improvedhighqualitydraftgenomesequenceofrhodococcusspjg3aeurypsychrophilicactinobacteriafromantarcticdryvalleypermafrost