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An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer

Establishing how a series of potentially important genes might relate to each other is relevant to understand the origin and evolution of illnesses, such as cancer. High-throughput biological experiments have played a critical role in providing information in this regard. A special challenge, howeve...

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Detalles Bibliográficos
Autores principales: Lorenzo, Enery, Camacho-Caceres, Katia, Ropelewski, Alexander J., Rosas, Juan, Ortiz-Mojer, Michael, Perez-Marty, Lynn, Irizarry, Juan, Gonzalez, Valerie, Rodríguez, Jesús A., Cabrera-Rios, Mauricio, Isaza, Clara
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573573/
https://www.ncbi.nlm.nih.gov/pubmed/26388997
http://dx.doi.org/10.3390/microarrays4020287
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author Lorenzo, Enery
Camacho-Caceres, Katia
Ropelewski, Alexander J.
Rosas, Juan
Ortiz-Mojer, Michael
Perez-Marty, Lynn
Irizarry, Juan
Gonzalez, Valerie
Rodríguez, Jesús A.
Cabrera-Rios, Mauricio
Isaza, Clara
author_facet Lorenzo, Enery
Camacho-Caceres, Katia
Ropelewski, Alexander J.
Rosas, Juan
Ortiz-Mojer, Michael
Perez-Marty, Lynn
Irizarry, Juan
Gonzalez, Valerie
Rodríguez, Jesús A.
Cabrera-Rios, Mauricio
Isaza, Clara
author_sort Lorenzo, Enery
collection PubMed
description Establishing how a series of potentially important genes might relate to each other is relevant to understand the origin and evolution of illnesses, such as cancer. High-throughput biological experiments have played a critical role in providing information in this regard. A special challenge, however, is that of trying to conciliate information from separate microarray experiments to build a potential genetic signaling path. This work proposes a two-step analysis pipeline, based on optimization, to approach meta-analysis aiming to build a proxy for a genetic signaling path.
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spelling pubmed-45735732015-09-18 An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer Lorenzo, Enery Camacho-Caceres, Katia Ropelewski, Alexander J. Rosas, Juan Ortiz-Mojer, Michael Perez-Marty, Lynn Irizarry, Juan Gonzalez, Valerie Rodríguez, Jesús A. Cabrera-Rios, Mauricio Isaza, Clara Microarrays (Basel) Article Establishing how a series of potentially important genes might relate to each other is relevant to understand the origin and evolution of illnesses, such as cancer. High-throughput biological experiments have played a critical role in providing information in this regard. A special challenge, however, is that of trying to conciliate information from separate microarray experiments to build a potential genetic signaling path. This work proposes a two-step analysis pipeline, based on optimization, to approach meta-analysis aiming to build a proxy for a genetic signaling path. MDPI 2015-05-28 /pmc/articles/PMC4573573/ /pubmed/26388997 http://dx.doi.org/10.3390/microarrays4020287 Text en © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lorenzo, Enery
Camacho-Caceres, Katia
Ropelewski, Alexander J.
Rosas, Juan
Ortiz-Mojer, Michael
Perez-Marty, Lynn
Irizarry, Juan
Gonzalez, Valerie
Rodríguez, Jesús A.
Cabrera-Rios, Mauricio
Isaza, Clara
An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title_full An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title_fullStr An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title_full_unstemmed An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title_short An Optimization-Driven Analysis Pipeline to Uncover Biomarkers and Signaling Paths: Cervix Cancer
title_sort optimization-driven analysis pipeline to uncover biomarkers and signaling paths: cervix cancer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573573/
https://www.ncbi.nlm.nih.gov/pubmed/26388997
http://dx.doi.org/10.3390/microarrays4020287
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