Cargando…

Understanding Transcription Factor Regulation by Integrating Gene Expression and DNase I Hypersensitive Sites

Transcription factors are proteins that bind to DNA sequences to regulate gene transcription. The transcription factor binding sites are short DNA sequences (5–20 bp long) specifically bound by one or more transcription factors. The identification of transcription factor binding sites and prediction...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Guohua, Wang, Fang, Huang, Qian, Li, Yu, Liu, Yunlong, Wang, Yadong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Hindawi Publishing Corporation 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4573618/ https://www.ncbi.nlm.nih.gov/pubmed/26425553 http://dx.doi.org/10.1155/2015/757530

Ejemplares similares

Deep learning for DNase I hypersensitive sites identification
por: Lyu, Chuqiao, et al.
Publicado: (2018)

Index and biological spectrum of human DNase I hypersensitive sites
por: Meuleman, Wouter, et al.
Publicado: (2020)

Correlation Between DNase I Hypersensitive Site Distribution and Gene Expression in HeLa S3 Cells
por: Wang, Ya-Mei, et al.
Publicado: (2012)

Genome-wide prediction of DNase I hypersensitivity using gene expression
por: Zhou, Weiqiang, et al.
Publicado: (2017)

Transposable element derived DNaseI-hypersensitive sites in the human genome
por: Mariño-Ramírez, Leonardo, et al.
Publicado: (2006)

Prediction of DNase I Hypersensitive Sites by Using Pseudo Nucleotide Compositions
por: Feng, Pengmian, et al.
Publicado: (2014)

PlantDHS: a database for DNase I hypersensitive sites in plants
por: Zhang, Tao, et al.
Publicado: (2016)

Genome-wide mapping of DNase I hypersensitive sites in pineapple leaves
por: Ouyang, Kai, et al.
Publicado: (2023)

Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data
por: Madrigal, Pedro, et al.
Publicado: (2012)

A closer look into DNase I hypersensitivity
por: He, Housheng Hansen, et al.
Publicado: (2013)

Unveiling the gene regulatory landscape in diseases through the identification of DNase I-hypersensitive sites
por: Chen, Ying, et al.
Publicado: (2019)

Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
por: Cumbie, Jason S., et al.
Publicado: (2015)

Rapid and Unambiguous Detection of DNase I Hypersensitive Site in Rare Population of Cells
por: Zeng, Wei-ping, et al.
Publicado: (2014)

Multiplex indexing approach for the detection of DNase I hypersensitive sites in single cells
por: Gao, Weiwu, et al.
Publicado: (2021)

Evolution and Comprehensive Analysis of DNaseI Hypersensitive Sites in Regulatory Regions of Primate Brain-Related Genes
por: Lu, Yueer, et al.
Publicado: (2019)

Nucleosome and transcription activator antagonism at human β-globin locus control region DNase I hypersensitive sites
por: Kim, AeRi, et al.
Publicado: (2007)

Genome-wide mapping of DNase I hypersensitive sites and association analysis with gene expression in MSB1 cells
por: He, Yanghua, et al.
Publicado: (2014)

Functional compensation among HMGN variants modulates the DNase I hypersensitive sites at enhancers
por: Deng, Tao, et al.
Publicado: (2015)

Genome-wide Detection of DNase I Hypersensitive Sites in Single Cells and FFPE Samples
por: Jin, Wenfei, et al.
Publicado: (2015)

Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer
por: D′Antonio, Matteo, et al.
Publicado: (2017)

A Quantitative Analysis of the Impact on Chromatin Accessibility by Histone Modifications and Binding of Transcription Factors in DNase I Hypersensitive Sites
por: Cui, Peng, et al.
Publicado: (2013)

Analysis of Mice Lacking DNaseI Hypersensitive Sites at the 5′ End of the IgH Locus
por: Perlot, Thomas, et al.
Publicado: (2010)

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites
por: Shi, Baochen, et al.
Publicado: (2009)

Differential DNase I hypersensitivity reveals factor-dependent chromatin dynamics
por: He, Housheng Hansen, et al.
Publicado: (2012)

Real-time PCR mapping of DNaseI-hypersensitive sites using a novel ligation-mediated amplification technique
por: Follows, George A., et al.
Publicado: (2007)

Integrating multiple oestrogen receptor alpha ChIP studies: overlap with disease susceptibility regions, DNase I hypersensitivity peaks and gene expression
por: Handel, Adam E, et al.
Publicado: (2013)

DNaseI hypersensitivity at gene-poor, FSH dystrophy-linked 4q35.2
por: Xu, Xueqing, et al.
Publicado: (2009)

A reliable method to display authentic DNase I hypersensitive sites at long-ranges in single-copy genes from large genomes
por: Pipkin, Matthew E., et al.
Publicado: (2006)

Motif analysis in DNAse hypersensitivity regions uncovers distal cis elements associated with gene expression
por: Ziemann, Mark, et al.
Publicado: (2013)

Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers
por: Malin, Justin, et al.
Publicado: (2013)

Genome-Wide Nucleosome Positioning Is Orchestrated by Genomic Regions Associated with DNase I Hypersensitivity in Rice
por: Wu, Yufeng, et al.
Publicado: (2014)

DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements
por: Wilken, Matthew S, et al.
Publicado: (2015)

Rapid high-throughput analysis of DNaseI hypersensitive sites using a modified Multiplex Ligation-dependent Probe Amplification approach
por: Ohnesorg, Thomas, et al.
Publicado: (2009)

DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest
por: Manavalan, Balachandran, et al.
Publicado: (2017)

Overexpression of c‐Myc Inhibits the Appearance of a Specific DNase I Hypersensitive Site in the β‐Globin Chromatin in Murine Erythroleukemia Cells
por: Takada, Shinji, et al.
Publicado: (1991)

T cell receptor beta gene has two downstream DNase I hypersensitive regions. Possible mechanisms of tissue- and stage-specific gene regulation
Publicado: (1989)

Genome-wide mapping of DNase I hypersensitive sites reveals chromatin accessibility changes in Arabidopsis euchromatin and heterochromatin regions under extended darkness
por: Liu, Yue, et al.
Publicado: (2017)

Histone H3K4me1 strongly activates the DNase I hypersensitive sites in super-enhancers than those in typical enhancers
por: Kang, Yujin, et al.
Publicado: (2021)

Signal Transducers and Activators of Transcription-1 (STAT1) Regulates microRNA Transcription in Interferon γ-Stimulated HeLa Cells
por: Wang, Guohua, et al.
Publicado: (2010)

HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells
por: Deng, Tao, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_it328bnib29qjing2qn09a2ifg