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PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theore...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574777/ https://www.ncbi.nlm.nih.gov/pubmed/26378457 http://dx.doi.org/10.1371/journal.pone.0137796 |
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author | Pham, Thong Sheridan, Paul Shimodaira, Hidetoshi |
author_facet | Pham, Thong Sheridan, Paul Shimodaira, Hidetoshi |
author_sort | Pham, Thong |
collection | PubMed |
description | Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theoretical matter of verifying whether this hypothesized process is operative in real-world networks, but also for the practical insights that follow from knowledge of its functional form. Here we describe a maximum likelihood based estimation method for the measurement of preferential attachment in temporal complex networks. We call the method PAFit, and implement it in an R package of the same name. PAFit constitutes an advance over previous methods primarily because we based it on a nonparametric statistical framework that enables attachment kernel estimation free of any assumptions about its functional form. We show this results in PAFit outperforming the popular methods of Jeong and Newman in Monte Carlo simulations. What is more, we found that the application of PAFit to a publically available Flickr social network dataset yielded clear evidence for a deviation of the attachment kernel from the popularly assumed log-linear form. Independent of our main work, we provide a correction to a consequential error in Newman’s original method which had evidently gone unnoticed since its publication over a decade ago. |
format | Online Article Text |
id | pubmed-4574777 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45747772015-09-25 PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks Pham, Thong Sheridan, Paul Shimodaira, Hidetoshi PLoS One Research Article Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theoretical matter of verifying whether this hypothesized process is operative in real-world networks, but also for the practical insights that follow from knowledge of its functional form. Here we describe a maximum likelihood based estimation method for the measurement of preferential attachment in temporal complex networks. We call the method PAFit, and implement it in an R package of the same name. PAFit constitutes an advance over previous methods primarily because we based it on a nonparametric statistical framework that enables attachment kernel estimation free of any assumptions about its functional form. We show this results in PAFit outperforming the popular methods of Jeong and Newman in Monte Carlo simulations. What is more, we found that the application of PAFit to a publically available Flickr social network dataset yielded clear evidence for a deviation of the attachment kernel from the popularly assumed log-linear form. Independent of our main work, we provide a correction to a consequential error in Newman’s original method which had evidently gone unnoticed since its publication over a decade ago. Public Library of Science 2015-09-17 /pmc/articles/PMC4574777/ /pubmed/26378457 http://dx.doi.org/10.1371/journal.pone.0137796 Text en © 2015 Pham et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Pham, Thong Sheridan, Paul Shimodaira, Hidetoshi PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title | PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title_full | PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title_fullStr | PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title_full_unstemmed | PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title_short | PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks |
title_sort | pafit: a statistical method for measuring preferential attachment in temporal complex networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574777/ https://www.ncbi.nlm.nih.gov/pubmed/26378457 http://dx.doi.org/10.1371/journal.pone.0137796 |
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