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PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks

Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theore...

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Detalles Bibliográficos
Autores principales: Pham, Thong, Sheridan, Paul, Shimodaira, Hidetoshi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574777/
https://www.ncbi.nlm.nih.gov/pubmed/26378457
http://dx.doi.org/10.1371/journal.pone.0137796
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author Pham, Thong
Sheridan, Paul
Shimodaira, Hidetoshi
author_facet Pham, Thong
Sheridan, Paul
Shimodaira, Hidetoshi
author_sort Pham, Thong
collection PubMed
description Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theoretical matter of verifying whether this hypothesized process is operative in real-world networks, but also for the practical insights that follow from knowledge of its functional form. Here we describe a maximum likelihood based estimation method for the measurement of preferential attachment in temporal complex networks. We call the method PAFit, and implement it in an R package of the same name. PAFit constitutes an advance over previous methods primarily because we based it on a nonparametric statistical framework that enables attachment kernel estimation free of any assumptions about its functional form. We show this results in PAFit outperforming the popular methods of Jeong and Newman in Monte Carlo simulations. What is more, we found that the application of PAFit to a publically available Flickr social network dataset yielded clear evidence for a deviation of the attachment kernel from the popularly assumed log-linear form. Independent of our main work, we provide a correction to a consequential error in Newman’s original method which had evidently gone unnoticed since its publication over a decade ago.
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spelling pubmed-45747772015-09-25 PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks Pham, Thong Sheridan, Paul Shimodaira, Hidetoshi PLoS One Research Article Preferential attachment is a stochastic process that has been proposed to explain certain topological features characteristic of complex networks from diverse domains. The systematic investigation of preferential attachment is an important area of research in network science, not only for the theoretical matter of verifying whether this hypothesized process is operative in real-world networks, but also for the practical insights that follow from knowledge of its functional form. Here we describe a maximum likelihood based estimation method for the measurement of preferential attachment in temporal complex networks. We call the method PAFit, and implement it in an R package of the same name. PAFit constitutes an advance over previous methods primarily because we based it on a nonparametric statistical framework that enables attachment kernel estimation free of any assumptions about its functional form. We show this results in PAFit outperforming the popular methods of Jeong and Newman in Monte Carlo simulations. What is more, we found that the application of PAFit to a publically available Flickr social network dataset yielded clear evidence for a deviation of the attachment kernel from the popularly assumed log-linear form. Independent of our main work, we provide a correction to a consequential error in Newman’s original method which had evidently gone unnoticed since its publication over a decade ago. Public Library of Science 2015-09-17 /pmc/articles/PMC4574777/ /pubmed/26378457 http://dx.doi.org/10.1371/journal.pone.0137796 Text en © 2015 Pham et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Pham, Thong
Sheridan, Paul
Shimodaira, Hidetoshi
PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title_full PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title_fullStr PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title_full_unstemmed PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title_short PAFit: A Statistical Method for Measuring Preferential Attachment in Temporal Complex Networks
title_sort pafit: a statistical method for measuring preferential attachment in temporal complex networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4574777/
https://www.ncbi.nlm.nih.gov/pubmed/26378457
http://dx.doi.org/10.1371/journal.pone.0137796
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