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Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification

Dengue is usually diagnosed by isolation of the virus, serology or molecular diagnostic methods. Several commercial kits for the diagnosis of dengue are existing, but concerns have arisen regarding to the affordability and performance characteristics of these kits. Hence, the loop-mediated isotherma...

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Autores principales: Lau, Yee-Ling, Lai, Meng-Yee, Teoh, Boon-Teong, Abd-Jamil, Juraina, Johari, Jefree, Sam, Sing-Sin, Tan, Kim-Kee, AbuBakar, Sazaly
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575147/
https://www.ncbi.nlm.nih.gov/pubmed/26384248
http://dx.doi.org/10.1371/journal.pone.0138694
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author Lau, Yee-Ling
Lai, Meng-Yee
Teoh, Boon-Teong
Abd-Jamil, Juraina
Johari, Jefree
Sam, Sing-Sin
Tan, Kim-Kee
AbuBakar, Sazaly
author_facet Lau, Yee-Ling
Lai, Meng-Yee
Teoh, Boon-Teong
Abd-Jamil, Juraina
Johari, Jefree
Sam, Sing-Sin
Tan, Kim-Kee
AbuBakar, Sazaly
author_sort Lau, Yee-Ling
collection PubMed
description Dengue is usually diagnosed by isolation of the virus, serology or molecular diagnostic methods. Several commercial kits for the diagnosis of dengue are existing, but concerns have arisen regarding to the affordability and performance characteristics of these kits. Hence, the loop-mediated isothermal amplification (LAMP) is potentially ideal to be used especially in resource limited environments. Serum was collected from healthy donors and patients diagnosed with dengue infection. RNA extracted from the serum samples were tested by reverse-transcription-LAMP assay developed based on 3′-NCR gene sequences for DENV 1–4. Results were interpreted by a turbidity meter in real time or visually at the end of the assay. Sensitivity and specificity of RT-LAMP results were calculated and compared to qRT-PCR and ELISA. RT-LAMP is highly sensitive with the detection limit of 10 RNA copies for all serotypes. Dengue virus RNA was detected in all positive samples using RT-LAMP and none of the negative samples within 30–45 minutes. With continuing efforts in the optimization of this assay, RT-LAMP may provide a simple and reliable test for detecting DENV in areas where dengue is prevalent.
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spelling pubmed-45751472015-09-25 Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification Lau, Yee-Ling Lai, Meng-Yee Teoh, Boon-Teong Abd-Jamil, Juraina Johari, Jefree Sam, Sing-Sin Tan, Kim-Kee AbuBakar, Sazaly PLoS One Research Article Dengue is usually diagnosed by isolation of the virus, serology or molecular diagnostic methods. Several commercial kits for the diagnosis of dengue are existing, but concerns have arisen regarding to the affordability and performance characteristics of these kits. Hence, the loop-mediated isothermal amplification (LAMP) is potentially ideal to be used especially in resource limited environments. Serum was collected from healthy donors and patients diagnosed with dengue infection. RNA extracted from the serum samples were tested by reverse-transcription-LAMP assay developed based on 3′-NCR gene sequences for DENV 1–4. Results were interpreted by a turbidity meter in real time or visually at the end of the assay. Sensitivity and specificity of RT-LAMP results were calculated and compared to qRT-PCR and ELISA. RT-LAMP is highly sensitive with the detection limit of 10 RNA copies for all serotypes. Dengue virus RNA was detected in all positive samples using RT-LAMP and none of the negative samples within 30–45 minutes. With continuing efforts in the optimization of this assay, RT-LAMP may provide a simple and reliable test for detecting DENV in areas where dengue is prevalent. Public Library of Science 2015-09-18 /pmc/articles/PMC4575147/ /pubmed/26384248 http://dx.doi.org/10.1371/journal.pone.0138694 Text en © 2015 Lau et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Lau, Yee-Ling
Lai, Meng-Yee
Teoh, Boon-Teong
Abd-Jamil, Juraina
Johari, Jefree
Sam, Sing-Sin
Tan, Kim-Kee
AbuBakar, Sazaly
Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title_full Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title_fullStr Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title_full_unstemmed Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title_short Colorimetric Detection of Dengue by Single Tube Reverse-Transcription-Loop-Mediated Isothermal Amplification
title_sort colorimetric detection of dengue by single tube reverse-transcription-loop-mediated isothermal amplification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575147/
https://www.ncbi.nlm.nih.gov/pubmed/26384248
http://dx.doi.org/10.1371/journal.pone.0138694
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