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High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)

Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in...

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Autores principales: De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Ivanova, Natalia, Pati, Amrita, Markowitz, Victor, Woyke, Tanja, Yates, Ron, Howieson, John, Kyrpides, Nikos, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575442/
https://www.ncbi.nlm.nih.gov/pubmed/26388968
http://dx.doi.org/10.1186/s40793-015-0048-3
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author De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Ivanova, Natalia
Pati, Amrita
Markowitz, Victor
Woyke, Tanja
Yates, Ron
Howieson, John
Kyrpides, Nikos
Reeve, Wayne
author_facet De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Ivanova, Natalia
Pati, Amrita
Markowitz, Victor
Woyke, Tanja
Yates, Ron
Howieson, John
Kyrpides, Nikos
Reeve, Wayne
author_sort De Meyer, Sofie E.
collection PubMed
description Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in infertile and deep sandy soils with acidic pH, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. WSM3556(T) thus represents a potential inoculant quality strain for L. ambigua for which we describe the general features, together with genome sequence and annotation. The 7,679,067 bp high-quality permanent draft genome is arranged in 140 scaffolds of 141 contigs, contains 7,059 protein-coding genes and 64 RNA-only encoding genes, and is part of the GEBA-RNB project proposal.
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spelling pubmed-45754422015-09-20 High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Ivanova, Natalia Pati, Amrita Markowitz, Victor Woyke, Tanja Yates, Ron Howieson, John Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in infertile and deep sandy soils with acidic pH, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. WSM3556(T) thus represents a potential inoculant quality strain for L. ambigua for which we describe the general features, together with genome sequence and annotation. The 7,679,067 bp high-quality permanent draft genome is arranged in 140 scaffolds of 141 contigs, contains 7,059 protein-coding genes and 64 RNA-only encoding genes, and is part of the GEBA-RNB project proposal. BioMed Central 2015-09-19 /pmc/articles/PMC4575442/ /pubmed/26388968 http://dx.doi.org/10.1186/s40793-015-0048-3 Text en © De Meyer et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Ivanova, Natalia
Pati, Amrita
Markowitz, Victor
Woyke, Tanja
Yates, Ron
Howieson, John
Kyrpides, Nikos
Reeve, Wayne
High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title_full High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title_fullStr High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title_full_unstemmed High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title_short High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
title_sort high-quality permanent draft genome sequence of the lebeckia - nodulating burkholderia dilworthii strain wsm3556(t)
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575442/
https://www.ncbi.nlm.nih.gov/pubmed/26388968
http://dx.doi.org/10.1186/s40793-015-0048-3
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