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High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)
Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575442/ https://www.ncbi.nlm.nih.gov/pubmed/26388968 http://dx.doi.org/10.1186/s40793-015-0048-3 |
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author | De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Ivanova, Natalia Pati, Amrita Markowitz, Victor Woyke, Tanja Yates, Ron Howieson, John Kyrpides, Nikos Reeve, Wayne |
author_facet | De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Ivanova, Natalia Pati, Amrita Markowitz, Victor Woyke, Tanja Yates, Ron Howieson, John Kyrpides, Nikos Reeve, Wayne |
author_sort | De Meyer, Sofie E. |
collection | PubMed |
description | Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in infertile and deep sandy soils with acidic pH, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. WSM3556(T) thus represents a potential inoculant quality strain for L. ambigua for which we describe the general features, together with genome sequence and annotation. The 7,679,067 bp high-quality permanent draft genome is arranged in 140 scaffolds of 141 contigs, contains 7,059 protein-coding genes and 64 RNA-only encoding genes, and is part of the GEBA-RNB project proposal. |
format | Online Article Text |
id | pubmed-4575442 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45754422015-09-20 High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Ivanova, Natalia Pati, Amrita Markowitz, Victor Woyke, Tanja Yates, Ron Howieson, John Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Report Burkholderia dilworthii strain WSM3556(T) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected near Grotto Bay Nature Reserve, in the Western Cape of South Africa, in October 2004. This plant persists in infertile and deep sandy soils with acidic pH, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. WSM3556(T) thus represents a potential inoculant quality strain for L. ambigua for which we describe the general features, together with genome sequence and annotation. The 7,679,067 bp high-quality permanent draft genome is arranged in 140 scaffolds of 141 contigs, contains 7,059 protein-coding genes and 64 RNA-only encoding genes, and is part of the GEBA-RNB project proposal. BioMed Central 2015-09-19 /pmc/articles/PMC4575442/ /pubmed/26388968 http://dx.doi.org/10.1186/s40793-015-0048-3 Text en © De Meyer et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Ivanova, Natalia Pati, Amrita Markowitz, Victor Woyke, Tanja Yates, Ron Howieson, John Kyrpides, Nikos Reeve, Wayne High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title | High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title_full | High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title_fullStr | High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title_full_unstemmed | High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title_short | High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T) |
title_sort | high-quality permanent draft genome sequence of the lebeckia - nodulating burkholderia dilworthii strain wsm3556(t) |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4575442/ https://www.ncbi.nlm.nih.gov/pubmed/26388968 http://dx.doi.org/10.1186/s40793-015-0048-3 |
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