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High-resolution computed tomography reconstructions of invertebrate burrow systems

The architecture of biogenic structures can be highly influential in determining species contributions to major soil and sediment processes, but detailed 3-D characterisations are rare and descriptors of form and complexity are lacking. Here we provide replicate high-resolution micro-focus computed...

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Autores principales: Hale, Rachel, Boardman, Richard, Mavrogordato, Mark N., Sinclair, Ian, Tolhurst, Trevor J., Solan, Martin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576671/
https://www.ncbi.nlm.nih.gov/pubmed/26396743
http://dx.doi.org/10.1038/sdata.2015.52
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author Hale, Rachel
Boardman, Richard
Mavrogordato, Mark N.
Sinclair, Ian
Tolhurst, Trevor J.
Solan, Martin
author_facet Hale, Rachel
Boardman, Richard
Mavrogordato, Mark N.
Sinclair, Ian
Tolhurst, Trevor J.
Solan, Martin
author_sort Hale, Rachel
collection PubMed
description The architecture of biogenic structures can be highly influential in determining species contributions to major soil and sediment processes, but detailed 3-D characterisations are rare and descriptors of form and complexity are lacking. Here we provide replicate high-resolution micro-focus computed tomography (μ-CT) data for the complete burrow systems of three co-occurring, but functionally contrasting, sediment-dwelling inter-tidal invertebrates assembled alone, and in combination, in representative model aquaria. These data (≤2,000 raw image slices aquarium(−1), isotropic voxel resolution, 81 μm) provide reference models that can be used for the development of novel structural analysis routines that will be of value within the fields of ecology, pedology, geomorphology, palaeobiology, ichnology and mechanical engineering. We also envisage opportunity for those investigating transport networks, vascular systems, plant rooting systems, neuron connectivity patterns, or those developing image analysis or statistics related to pattern or shape recognition. The dataset will allow investigators to develop or test novel methodology and ideas without the need to generate a complete three-dimensional computation of exemplar architecture.
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spelling pubmed-45766712015-09-22 High-resolution computed tomography reconstructions of invertebrate burrow systems Hale, Rachel Boardman, Richard Mavrogordato, Mark N. Sinclair, Ian Tolhurst, Trevor J. Solan, Martin Sci Data Data Descriptor The architecture of biogenic structures can be highly influential in determining species contributions to major soil and sediment processes, but detailed 3-D characterisations are rare and descriptors of form and complexity are lacking. Here we provide replicate high-resolution micro-focus computed tomography (μ-CT) data for the complete burrow systems of three co-occurring, but functionally contrasting, sediment-dwelling inter-tidal invertebrates assembled alone, and in combination, in representative model aquaria. These data (≤2,000 raw image slices aquarium(−1), isotropic voxel resolution, 81 μm) provide reference models that can be used for the development of novel structural analysis routines that will be of value within the fields of ecology, pedology, geomorphology, palaeobiology, ichnology and mechanical engineering. We also envisage opportunity for those investigating transport networks, vascular systems, plant rooting systems, neuron connectivity patterns, or those developing image analysis or statistics related to pattern or shape recognition. The dataset will allow investigators to develop or test novel methodology and ideas without the need to generate a complete three-dimensional computation of exemplar architecture. Nature Publishing Group 2015-09-21 /pmc/articles/PMC4576671/ /pubmed/26396743 http://dx.doi.org/10.1038/sdata.2015.52 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0 This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0 Metadata associated with this Data Descriptor is available at http://www.nature.com/sdata/ and is released under the CC0 waiver to maximize reuse.
spellingShingle Data Descriptor
Hale, Rachel
Boardman, Richard
Mavrogordato, Mark N.
Sinclair, Ian
Tolhurst, Trevor J.
Solan, Martin
High-resolution computed tomography reconstructions of invertebrate burrow systems
title High-resolution computed tomography reconstructions of invertebrate burrow systems
title_full High-resolution computed tomography reconstructions of invertebrate burrow systems
title_fullStr High-resolution computed tomography reconstructions of invertebrate burrow systems
title_full_unstemmed High-resolution computed tomography reconstructions of invertebrate burrow systems
title_short High-resolution computed tomography reconstructions of invertebrate burrow systems
title_sort high-resolution computed tomography reconstructions of invertebrate burrow systems
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576671/
https://www.ncbi.nlm.nih.gov/pubmed/26396743
http://dx.doi.org/10.1038/sdata.2015.52
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