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DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes
Summary: We present DisVis, a Python package and command line tool to calculate the reduced accessible interaction space of distance-restrained binary protein complexes, allowing for direct visualization and quantification of the information content of the distance restraints. The approach is genera...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4576694/ https://www.ncbi.nlm.nih.gov/pubmed/26026169 http://dx.doi.org/10.1093/bioinformatics/btv333 |
Sumario: | Summary: We present DisVis, a Python package and command line tool to calculate the reduced accessible interaction space of distance-restrained binary protein complexes, allowing for direct visualization and quantification of the information content of the distance restraints. The approach is general and can also be used as a knowledge-based distance energy term in FFT-based docking directly during the sampling stage. Availability and implementation: The source code with documentation is freely available from https://github.com/haddocking/disvis. Contact: a.m.j.j.bonvin@uu.nl Supplementary information: Supplementary data are available at Bioinformatics online. |
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