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Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1)
PREMISE OF THE STUDY: Microsatellite loci were developed for Trichophorum planifolium (Cyperaceae), an endangered woodland sedge protected under federal and provincial legislation in Canada, to explore patterns of population genetic diversity and differentiation in the species. METHODS AND RESULTS:...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578379/ https://www.ncbi.nlm.nih.gov/pubmed/26421254 http://dx.doi.org/10.3732/apps.1500050 |
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author | Nowell, Victoria J. Wang, Song Smith, Tyler W. |
author_facet | Nowell, Victoria J. Wang, Song Smith, Tyler W. |
author_sort | Nowell, Victoria J. |
collection | PubMed |
description | PREMISE OF THE STUDY: Microsatellite loci were developed for Trichophorum planifolium (Cyperaceae), an endangered woodland sedge protected under federal and provincial legislation in Canada, to explore patterns of population genetic diversity and differentiation in the species. METHODS AND RESULTS: Sixty-three primer pairs were evaluated for amplification consistency and screened for polymorphisms in 96 samples collected from 12 populations of T. planifolium distributed through the range of the species. Of these, 11 loci were shown to be polymorphic, displaying two to six alleles. Mean observed heterozygosity across loci ranged from 0.00 to 0.06 among populations tested. CONCLUSIONS: The results suggest that the 11 primer pairs developed in this study will be useful for future studies of broad-scale genetic variation in T. planifolium and in guiding management protocols for the species in Canada. |
format | Online Article Text |
id | pubmed-4578379 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-45783792015-09-29 Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) Nowell, Victoria J. Wang, Song Smith, Tyler W. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite loci were developed for Trichophorum planifolium (Cyperaceae), an endangered woodland sedge protected under federal and provincial legislation in Canada, to explore patterns of population genetic diversity and differentiation in the species. METHODS AND RESULTS: Sixty-three primer pairs were evaluated for amplification consistency and screened for polymorphisms in 96 samples collected from 12 populations of T. planifolium distributed through the range of the species. Of these, 11 loci were shown to be polymorphic, displaying two to six alleles. Mean observed heterozygosity across loci ranged from 0.00 to 0.06 among populations tested. CONCLUSIONS: The results suggest that the 11 primer pairs developed in this study will be useful for future studies of broad-scale genetic variation in T. planifolium and in guiding management protocols for the species in Canada. Botanical Society of America 2015-09-16 /pmc/articles/PMC4578379/ /pubmed/26421254 http://dx.doi.org/10.3732/apps.1500050 Text en © 2015 Her Majesty the Queen in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada. Published by the Botanical Society of America |
spellingShingle | Primer Note Nowell, Victoria J. Wang, Song Smith, Tyler W. Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title | Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title_full | Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title_fullStr | Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title_full_unstemmed | Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title_short | Development and characterization of 11 microsatellite primers for the sedge Trichophorum planifolium (Cyperaceae)(1) |
title_sort | development and characterization of 11 microsatellite primers for the sedge trichophorum planifolium (cyperaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578379/ https://www.ncbi.nlm.nih.gov/pubmed/26421254 http://dx.doi.org/10.3732/apps.1500050 |
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