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Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)

Effective workflows are essential components in the digitization of biodiversity specimen collections. To date, no comprehensive, community-vetted workflows have been published for digitizing flat sheets and packets of plants, algae, and fungi, even though latest estimates suggest that only 33% of h...

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Autores principales: Nelson, Gil, Sweeney, Patrick, Wallace, Lisa E., Rabeler, Richard K., Allard, Dorothy, Brown, Herrick, Carter, J. Richard, Denslow, Michael W., Ellwood, Elizabeth R., Germain-Aubrey, Charlotte C., Gilbert, Ed, Gillespie, Emily, Goertzen, Leslie R., Legler, Ben, Marchant, D. Blaine, Marsico, Travis D., Morris, Ashley B., Murrell, Zack, Nazaire, Mare, Neefus, Chris, Oberreiter, Shanna, Paul, Deborah, Ruhfel, Brad R., Sasek, Thomas, Shaw, Joey, Soltis, Pamela S., Watson, Kimberly, Weeks, Andrea, Mast, Austin R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578381/
https://www.ncbi.nlm.nih.gov/pubmed/26421256
http://dx.doi.org/10.3732/apps.1500065
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author Nelson, Gil
Sweeney, Patrick
Wallace, Lisa E.
Rabeler, Richard K.
Allard, Dorothy
Brown, Herrick
Carter, J. Richard
Denslow, Michael W.
Ellwood, Elizabeth R.
Germain-Aubrey, Charlotte C.
Gilbert, Ed
Gillespie, Emily
Goertzen, Leslie R.
Legler, Ben
Marchant, D. Blaine
Marsico, Travis D.
Morris, Ashley B.
Murrell, Zack
Nazaire, Mare
Neefus, Chris
Oberreiter, Shanna
Paul, Deborah
Ruhfel, Brad R.
Sasek, Thomas
Shaw, Joey
Soltis, Pamela S.
Watson, Kimberly
Weeks, Andrea
Mast, Austin R.
author_facet Nelson, Gil
Sweeney, Patrick
Wallace, Lisa E.
Rabeler, Richard K.
Allard, Dorothy
Brown, Herrick
Carter, J. Richard
Denslow, Michael W.
Ellwood, Elizabeth R.
Germain-Aubrey, Charlotte C.
Gilbert, Ed
Gillespie, Emily
Goertzen, Leslie R.
Legler, Ben
Marchant, D. Blaine
Marsico, Travis D.
Morris, Ashley B.
Murrell, Zack
Nazaire, Mare
Neefus, Chris
Oberreiter, Shanna
Paul, Deborah
Ruhfel, Brad R.
Sasek, Thomas
Shaw, Joey
Soltis, Pamela S.
Watson, Kimberly
Weeks, Andrea
Mast, Austin R.
author_sort Nelson, Gil
collection PubMed
description Effective workflows are essential components in the digitization of biodiversity specimen collections. To date, no comprehensive, community-vetted workflows have been published for digitizing flat sheets and packets of plants, algae, and fungi, even though latest estimates suggest that only 33% of herbarium specimens have been digitally transcribed, 54% of herbaria use a specimen database, and 24% are imaging specimens. In 2012, iDigBio, the U.S. National Science Foundation’s (NSF) coordinating center and national resource for the digitization of public, nonfederal U.S. collections, launched several working groups to address this deficiency. Here, we report the development of 14 workflow modules with 7–36 tasks each. These workflows represent the combined work of approximately 35 curators, directors, and collections managers representing more than 30 herbaria, including 15 NSF-supported plant-related Thematic Collections Networks and collaboratives. The workflows are provided for download as Portable Document Format (PDF) and Microsoft Word files. Customization of these workflows for specific institutional implementation is encouraged.
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spelling pubmed-45783812015-09-29 Digitization workflows for flat sheets and packets of plants, algae, and fungi(1) Nelson, Gil Sweeney, Patrick Wallace, Lisa E. Rabeler, Richard K. Allard, Dorothy Brown, Herrick Carter, J. Richard Denslow, Michael W. Ellwood, Elizabeth R. Germain-Aubrey, Charlotte C. Gilbert, Ed Gillespie, Emily Goertzen, Leslie R. Legler, Ben Marchant, D. Blaine Marsico, Travis D. Morris, Ashley B. Murrell, Zack Nazaire, Mare Neefus, Chris Oberreiter, Shanna Paul, Deborah Ruhfel, Brad R. Sasek, Thomas Shaw, Joey Soltis, Pamela S. Watson, Kimberly Weeks, Andrea Mast, Austin R. Appl Plant Sci Review Article Effective workflows are essential components in the digitization of biodiversity specimen collections. To date, no comprehensive, community-vetted workflows have been published for digitizing flat sheets and packets of plants, algae, and fungi, even though latest estimates suggest that only 33% of herbarium specimens have been digitally transcribed, 54% of herbaria use a specimen database, and 24% are imaging specimens. In 2012, iDigBio, the U.S. National Science Foundation’s (NSF) coordinating center and national resource for the digitization of public, nonfederal U.S. collections, launched several working groups to address this deficiency. Here, we report the development of 14 workflow modules with 7–36 tasks each. These workflows represent the combined work of approximately 35 curators, directors, and collections managers representing more than 30 herbaria, including 15 NSF-supported plant-related Thematic Collections Networks and collaboratives. The workflows are provided for download as Portable Document Format (PDF) and Microsoft Word files. Customization of these workflows for specific institutional implementation is encouraged. Botanical Society of America 2015-09-10 /pmc/articles/PMC4578381/ /pubmed/26421256 http://dx.doi.org/10.3732/apps.1500065 Text en © 2015 Nelson et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Review Article
Nelson, Gil
Sweeney, Patrick
Wallace, Lisa E.
Rabeler, Richard K.
Allard, Dorothy
Brown, Herrick
Carter, J. Richard
Denslow, Michael W.
Ellwood, Elizabeth R.
Germain-Aubrey, Charlotte C.
Gilbert, Ed
Gillespie, Emily
Goertzen, Leslie R.
Legler, Ben
Marchant, D. Blaine
Marsico, Travis D.
Morris, Ashley B.
Murrell, Zack
Nazaire, Mare
Neefus, Chris
Oberreiter, Shanna
Paul, Deborah
Ruhfel, Brad R.
Sasek, Thomas
Shaw, Joey
Soltis, Pamela S.
Watson, Kimberly
Weeks, Andrea
Mast, Austin R.
Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title_full Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title_fullStr Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title_full_unstemmed Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title_short Digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
title_sort digitization workflows for flat sheets and packets of plants, algae, and fungi(1)
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4578381/
https://www.ncbi.nlm.nih.gov/pubmed/26421256
http://dx.doi.org/10.3732/apps.1500065
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