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Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana
Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP ge...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4581322/ https://www.ncbi.nlm.nih.gov/pubmed/26307965 http://dx.doi.org/10.3390/ijms160819728 |
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author | Hu, Wei Hou, Xiaowan Huang, Chao Yan, Yan Tie, Weiwei Ding, Zehong Wei, Yunxie Liu, Juhua Miao, Hongxia Lu, Zhiwei Li, Meiying Xu, Biyu Jin, Zhiqiang |
author_facet | Hu, Wei Hou, Xiaowan Huang, Chao Yan, Yan Tie, Weiwei Ding, Zehong Wei, Yunxie Liu, Juhua Miao, Hongxia Lu, Zhiwei Li, Meiying Xu, Biyu Jin, Zhiqiang |
author_sort | Hu, Wei |
collection | PubMed |
description | Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP genes based on the banana genome sequence. Evolutionary analysis of AQPs from banana, Arabidopsis, poplar, and rice indicated that banana AQPs (MaAQPs) were clustered into four subfamilies. Conserved motif analysis showed that all banana AQPs contained the typical AQP-like or major intrinsic protein (MIP) domain. Gene structure analysis suggested the majority of MaAQPs had two to four introns with a highly specific number and length for each subfamily. Expression analysis of MaAQP genes during fruit development and postharvest ripening showed that some MaAQP genes exhibited high expression levels during these stages, indicating the involvement of MaAQP genes in banana fruit development and ripening. Additionally, some MaAQP genes showed strong induction after stress treatment and therefore, may represent potential candidates for improving banana resistance to abiotic stress. Taken together, this study identified some excellent tissue-specific, fruit development- and ripening-dependent, and abiotic stress-responsive candidate MaAQP genes, which could lay a solid foundation for genetic improvement of banana cultivars. |
format | Online Article Text |
id | pubmed-4581322 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-45813222015-09-28 Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana Hu, Wei Hou, Xiaowan Huang, Chao Yan, Yan Tie, Weiwei Ding, Zehong Wei, Yunxie Liu, Juhua Miao, Hongxia Lu, Zhiwei Li, Meiying Xu, Biyu Jin, Zhiqiang Int J Mol Sci Article Aquaporins (AQPs) function to selectively control the flow of water and other small molecules through biological membranes, playing crucial roles in various biological processes. However, little information is available on the AQP gene family in bananas. In this study, we identified 47 banana AQP genes based on the banana genome sequence. Evolutionary analysis of AQPs from banana, Arabidopsis, poplar, and rice indicated that banana AQPs (MaAQPs) were clustered into four subfamilies. Conserved motif analysis showed that all banana AQPs contained the typical AQP-like or major intrinsic protein (MIP) domain. Gene structure analysis suggested the majority of MaAQPs had two to four introns with a highly specific number and length for each subfamily. Expression analysis of MaAQP genes during fruit development and postharvest ripening showed that some MaAQP genes exhibited high expression levels during these stages, indicating the involvement of MaAQP genes in banana fruit development and ripening. Additionally, some MaAQP genes showed strong induction after stress treatment and therefore, may represent potential candidates for improving banana resistance to abiotic stress. Taken together, this study identified some excellent tissue-specific, fruit development- and ripening-dependent, and abiotic stress-responsive candidate MaAQP genes, which could lay a solid foundation for genetic improvement of banana cultivars. MDPI 2015-08-20 /pmc/articles/PMC4581322/ /pubmed/26307965 http://dx.doi.org/10.3390/ijms160819728 Text en © 2015 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hu, Wei Hou, Xiaowan Huang, Chao Yan, Yan Tie, Weiwei Ding, Zehong Wei, Yunxie Liu, Juhua Miao, Hongxia Lu, Zhiwei Li, Meiying Xu, Biyu Jin, Zhiqiang Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title | Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title_full | Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title_fullStr | Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title_full_unstemmed | Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title_short | Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana |
title_sort | genome-wide identification and expression analyses of aquaporin gene family during development and abiotic stress in banana |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4581322/ https://www.ncbi.nlm.nih.gov/pubmed/26307965 http://dx.doi.org/10.3390/ijms160819728 |
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