Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India

Bacterial community of the Khuangcherapuk cave sediment was assessed by Illumina amplicon sequencing. The metagenome comprised of 533,120 raw reads with an average base quality (Phred score) 36.75 and G + C content is 57.61%. A total of 18 bacterial phyla were detected with following abundant genus...

Descripción completa

Detalles Bibliográficos
Autores principales: De Mandal, Surajit, Panda, Amrita Kumari, Lalnunmawii, Esther, Bisht, Satpal Singh, Kumar, Nachimuthu Senthil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583610/
https://www.ncbi.nlm.nih.gov/pubmed/26484212
http://dx.doi.org/10.1016/j.gdata.2015.04.023
_version_ 1782391878395625472
author De Mandal, Surajit
Panda, Amrita Kumari
Lalnunmawii, Esther
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
author_facet De Mandal, Surajit
Panda, Amrita Kumari
Lalnunmawii, Esther
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
author_sort De Mandal, Surajit
collection PubMed
description Bacterial community of the Khuangcherapuk cave sediment was assessed by Illumina amplicon sequencing. The metagenome comprised of 533,120 raw reads with an average base quality (Phred score) 36.75 and G + C content is 57.61%. A total of 18 bacterial phyla were detected with following abundant genus — Mycobacterium (21.72%), Rhodococcus (7.09%), Alteromonas (1.42%), Holomonas (0.7%) and Salinisphaera (0.20%). Majority portion of the sequences (68%) is unclassified at the genus level indicating the possibilities for the presence of novel species in this cave. This study reports the cave bacterial diversity from the biodiversity hotspot region of Eastern Himalayas. Metagenome sequence data are available at NCBI under the Bioproject database with accession no. SRP056890.
format Online
Article
Text
id pubmed-4583610
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-45836102015-10-19 Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India De Mandal, Surajit Panda, Amrita Kumari Lalnunmawii, Esther Bisht, Satpal Singh Kumar, Nachimuthu Senthil Genom Data Data in Brief Bacterial community of the Khuangcherapuk cave sediment was assessed by Illumina amplicon sequencing. The metagenome comprised of 533,120 raw reads with an average base quality (Phred score) 36.75 and G + C content is 57.61%. A total of 18 bacterial phyla were detected with following abundant genus — Mycobacterium (21.72%), Rhodococcus (7.09%), Alteromonas (1.42%), Holomonas (0.7%) and Salinisphaera (0.20%). Majority portion of the sequences (68%) is unclassified at the genus level indicating the possibilities for the presence of novel species in this cave. This study reports the cave bacterial diversity from the biodiversity hotspot region of Eastern Himalayas. Metagenome sequence data are available at NCBI under the Bioproject database with accession no. SRP056890. Elsevier 2015-05-08 /pmc/articles/PMC4583610/ /pubmed/26484212 http://dx.doi.org/10.1016/j.gdata.2015.04.023 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
De Mandal, Surajit
Panda, Amrita Kumari
Lalnunmawii, Esther
Bisht, Satpal Singh
Kumar, Nachimuthu Senthil
Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title_full Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title_fullStr Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title_full_unstemmed Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title_short Illumina-based analysis of bacterial community in Khuangcherapuk cave of Mizoram, Northeast India
title_sort illumina-based analysis of bacterial community in khuangcherapuk cave of mizoram, northeast india
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583610/
https://www.ncbi.nlm.nih.gov/pubmed/26484212
http://dx.doi.org/10.1016/j.gdata.2015.04.023
work_keys_str_mv AT demandalsurajit illuminabasedanalysisofbacterialcommunityinkhuangcherapukcaveofmizoramnortheastindia
AT pandaamritakumari illuminabasedanalysisofbacterialcommunityinkhuangcherapukcaveofmizoramnortheastindia
AT lalnunmawiiesther illuminabasedanalysisofbacterialcommunityinkhuangcherapukcaveofmizoramnortheastindia
AT bishtsatpalsingh illuminabasedanalysisofbacterialcommunityinkhuangcherapukcaveofmizoramnortheastindia
AT kumarnachimuthusenthil illuminabasedanalysisofbacterialcommunityinkhuangcherapukcaveofmizoramnortheastindia

Ejemplares similares