Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25

A Gram positive bacterium, Georgenia sp. SUB25 was isolated from infected leaves of Solanum lycopersicum L. in Rajkot (22.30°N, 70.78°E), Gujarat, India. We sequenced and analyzed Georgenia sp. SUB25 that is novel plant pathogen using next generation sequencing platform and assembly yielded contigs...

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Detalles Bibliográficos
Autores principales: Patel, Pooja P., Rakhashiya, Purvi M., Thaker, Vrinda S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583696/
https://www.ncbi.nlm.nih.gov/pubmed/26484278
http://dx.doi.org/10.1016/j.gdata.2015.06.033
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author Patel, Pooja P.
Rakhashiya, Purvi M.
Thaker, Vrinda S.
author_facet Patel, Pooja P.
Rakhashiya, Purvi M.
Thaker, Vrinda S.
author_sort Patel, Pooja P.
collection PubMed
description A Gram positive bacterium, Georgenia sp. SUB25 was isolated from infected leaves of Solanum lycopersicum L. in Rajkot (22.30°N, 70.78°E), Gujarat, India. We sequenced and analyzed Georgenia sp. SUB25 that is novel plant pathogen using next generation sequencing platform and assembly yielded contigs representing a size of 4.84 Mb with 81 tRNAs and 88 rRNAs. The whole genome sequencing has been deposited in DDBJ/EMBL/GenBank under the accession number JNFL00000000. This genome sequence contains Type II secretion system genes, which involved in pathogenicity mechanism that may help to understand plant microbial interaction.
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spelling pubmed-45836962015-10-19 Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25 Patel, Pooja P. Rakhashiya, Purvi M. Thaker, Vrinda S. Genom Data Data in Brief A Gram positive bacterium, Georgenia sp. SUB25 was isolated from infected leaves of Solanum lycopersicum L. in Rajkot (22.30°N, 70.78°E), Gujarat, India. We sequenced and analyzed Georgenia sp. SUB25 that is novel plant pathogen using next generation sequencing platform and assembly yielded contigs representing a size of 4.84 Mb with 81 tRNAs and 88 rRNAs. The whole genome sequencing has been deposited in DDBJ/EMBL/GenBank under the accession number JNFL00000000. This genome sequence contains Type II secretion system genes, which involved in pathogenicity mechanism that may help to understand plant microbial interaction. Elsevier 2015-07-09 /pmc/articles/PMC4583696/ /pubmed/26484278 http://dx.doi.org/10.1016/j.gdata.2015.06.033 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Patel, Pooja P.
Rakhashiya, Purvi M.
Thaker, Vrinda S.
Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title_full Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title_fullStr Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title_full_unstemmed Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title_short Genomic analysis of novel phytopathogenic Georgenia sp. strain SUB25
title_sort genomic analysis of novel phytopathogenic georgenia sp. strain sub25
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4583696/
https://www.ncbi.nlm.nih.gov/pubmed/26484278
http://dx.doi.org/10.1016/j.gdata.2015.06.033
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