Computational analysis of miRNA-target community network reveals cross talk among different metabolisms

To date, only a few conserved miRNAs have been predicted in hexaploid (AABBDD) bread wheat and till now community behavior among miRNA is still in dark. Analysis of publically available 1287279 ESTs from NCBI resulted 262 putative pre-miRNAs and 39 novel mature miRNAs. A total 22,468 targets were id...

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Detalles Bibliográficos
Autores principales: Nigam, Deepti, Kadimi, Puneet K., Kumar, Sanjeev, Mishra, Dwijesh Chandra, Rai, Anil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584007/
https://www.ncbi.nlm.nih.gov/pubmed/26484271
http://dx.doi.org/10.1016/j.gdata.2015.04.028
Descripción
Sumario:To date, only a few conserved miRNAs have been predicted in hexaploid (AABBDD) bread wheat and till now community behavior among miRNA is still in dark. Analysis of publically available 1287279 ESTs from NCBI resulted 262 putative pre-miRNAs and 39 novel mature miRNAs. A total 22,468 targets were identified on 21 chromosomes. MiRNA target community was identified for genomes with different levels of cross talks. Gene ontology of these community targets suggests their differential involvement in different metabolisms along with common and stringent involvement in nitrogen metabolism.

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