Computational analysis of miRNA-target community network reveals cross talk among different metabolisms

To date, only a few conserved miRNAs have been predicted in hexaploid (AABBDD) bread wheat and till now community behavior among miRNA is still in dark. Analysis of publically available 1287279 ESTs from NCBI resulted 262 putative pre-miRNAs and 39 novel mature miRNAs. A total 22,468 targets were id...

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Autores principales: Nigam, Deepti, Kadimi, Puneet K., Kumar, Sanjeev, Mishra, Dwijesh Chandra, Rai, Anil
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584007/
https://www.ncbi.nlm.nih.gov/pubmed/26484271
http://dx.doi.org/10.1016/j.gdata.2015.04.028
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author Nigam, Deepti
Kadimi, Puneet K.
Kumar, Sanjeev
Mishra, Dwijesh Chandra
Rai, Anil
author_facet Nigam, Deepti
Kadimi, Puneet K.
Kumar, Sanjeev
Mishra, Dwijesh Chandra
Rai, Anil
author_sort Nigam, Deepti
collection PubMed
description To date, only a few conserved miRNAs have been predicted in hexaploid (AABBDD) bread wheat and till now community behavior among miRNA is still in dark. Analysis of publically available 1287279 ESTs from NCBI resulted 262 putative pre-miRNAs and 39 novel mature miRNAs. A total 22,468 targets were identified on 21 chromosomes. MiRNA target community was identified for genomes with different levels of cross talks. Gene ontology of these community targets suggests their differential involvement in different metabolisms along with common and stringent involvement in nitrogen metabolism.
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spelling pubmed-45840072015-10-19 Computational analysis of miRNA-target community network reveals cross talk among different metabolisms Nigam, Deepti Kadimi, Puneet K. Kumar, Sanjeev Mishra, Dwijesh Chandra Rai, Anil Genom Data Data in Brief To date, only a few conserved miRNAs have been predicted in hexaploid (AABBDD) bread wheat and till now community behavior among miRNA is still in dark. Analysis of publically available 1287279 ESTs from NCBI resulted 262 putative pre-miRNAs and 39 novel mature miRNAs. A total 22,468 targets were identified on 21 chromosomes. MiRNA target community was identified for genomes with different levels of cross talks. Gene ontology of these community targets suggests their differential involvement in different metabolisms along with common and stringent involvement in nitrogen metabolism. Elsevier 2015-05-22 /pmc/articles/PMC4584007/ /pubmed/26484271 http://dx.doi.org/10.1016/j.gdata.2015.04.028 Text en © 2015 Published by Elsevier Inc. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Nigam, Deepti
Kadimi, Puneet K.
Kumar, Sanjeev
Mishra, Dwijesh Chandra
Rai, Anil
Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title_full Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title_fullStr Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title_full_unstemmed Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title_short Computational analysis of miRNA-target community network reveals cross talk among different metabolisms
title_sort computational analysis of mirna-target community network reveals cross talk among different metabolisms
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4584007/
https://www.ncbi.nlm.nih.gov/pubmed/26484271
http://dx.doi.org/10.1016/j.gdata.2015.04.028
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