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Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations
Chemical synapses are comprised of a wide collection of intricate signaling pathways involving complex dynamics. These mechanisms are often reduced to simple spikes or exponential representations in order to enable computer simulations at higher spatial levels of complexity. However, these represent...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585022/ https://www.ncbi.nlm.nih.gov/pubmed/26441622 http://dx.doi.org/10.3389/fncom.2015.00112 |
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author | Hu, Eric Y. Bouteiller, Jean-Marie C. Song, Dong Baudry, Michel Berger, Theodore W. |
author_facet | Hu, Eric Y. Bouteiller, Jean-Marie C. Song, Dong Baudry, Michel Berger, Theodore W. |
author_sort | Hu, Eric Y. |
collection | PubMed |
description | Chemical synapses are comprised of a wide collection of intricate signaling pathways involving complex dynamics. These mechanisms are often reduced to simple spikes or exponential representations in order to enable computer simulations at higher spatial levels of complexity. However, these representations cannot capture important nonlinear dynamics found in synaptic transmission. Here, we propose an input-output (IO) synapse model capable of generating complex nonlinear dynamics while maintaining low computational complexity. This IO synapse model is an extension of a detailed mechanistic glutamatergic synapse model capable of capturing the input-output relationships of the mechanistic model using the Volterra functional power series. We demonstrate that the IO synapse model is able to successfully track the nonlinear dynamics of the synapse up to the third order with high accuracy. We also evaluate the accuracy of the IO synapse model at different input frequencies and compared its performance with that of kinetic models in compartmental neuron models. Our results demonstrate that the IO synapse model is capable of efficiently replicating complex nonlinear dynamics that were represented in the original mechanistic model and provide a method to replicate complex and diverse synaptic transmission within neuron network simulations. |
format | Online Article Text |
id | pubmed-4585022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-45850222015-10-05 Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations Hu, Eric Y. Bouteiller, Jean-Marie C. Song, Dong Baudry, Michel Berger, Theodore W. Front Comput Neurosci Neuroscience Chemical synapses are comprised of a wide collection of intricate signaling pathways involving complex dynamics. These mechanisms are often reduced to simple spikes or exponential representations in order to enable computer simulations at higher spatial levels of complexity. However, these representations cannot capture important nonlinear dynamics found in synaptic transmission. Here, we propose an input-output (IO) synapse model capable of generating complex nonlinear dynamics while maintaining low computational complexity. This IO synapse model is an extension of a detailed mechanistic glutamatergic synapse model capable of capturing the input-output relationships of the mechanistic model using the Volterra functional power series. We demonstrate that the IO synapse model is able to successfully track the nonlinear dynamics of the synapse up to the third order with high accuracy. We also evaluate the accuracy of the IO synapse model at different input frequencies and compared its performance with that of kinetic models in compartmental neuron models. Our results demonstrate that the IO synapse model is capable of efficiently replicating complex nonlinear dynamics that were represented in the original mechanistic model and provide a method to replicate complex and diverse synaptic transmission within neuron network simulations. Frontiers Media S.A. 2015-09-17 /pmc/articles/PMC4585022/ /pubmed/26441622 http://dx.doi.org/10.3389/fncom.2015.00112 Text en Copyright © 2015 Hu, Bouteiller, Song, Baudry and Berger. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Hu, Eric Y. Bouteiller, Jean-Marie C. Song, Dong Baudry, Michel Berger, Theodore W. Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title | Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title_full | Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title_fullStr | Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title_full_unstemmed | Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title_short | Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
title_sort | volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585022/ https://www.ncbi.nlm.nih.gov/pubmed/26441622 http://dx.doi.org/10.3389/fncom.2015.00112 |
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