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DeID – a data sharing tool for neuroimaging studies

Funding institutions and researchers increasingly expect that data will be shared to increase scientific integrity and provide other scientists with the opportunity to use the data with novel methods that may advance understanding in a particular field of study. In practice, sharing human subject da...

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Autores principales: Song, Xuebo, Wang, James, Wang, Anlin, Meng, Qingping, Prescott, Christian, Tsu, Loretta, Eckert, Mark A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585207/
https://www.ncbi.nlm.nih.gov/pubmed/26441500
http://dx.doi.org/10.3389/fnins.2015.00325
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author Song, Xuebo
Wang, James
Wang, Anlin
Meng, Qingping
Prescott, Christian
Tsu, Loretta
Eckert, Mark A.
author_facet Song, Xuebo
Wang, James
Wang, Anlin
Meng, Qingping
Prescott, Christian
Tsu, Loretta
Eckert, Mark A.
author_sort Song, Xuebo
collection PubMed
description Funding institutions and researchers increasingly expect that data will be shared to increase scientific integrity and provide other scientists with the opportunity to use the data with novel methods that may advance understanding in a particular field of study. In practice, sharing human subject data can be complicated because data must be de-identified prior to sharing. Moreover, integrating varied data types collected in a study can be challenging and time consuming. For example, sharing data from structural imaging studies of a complex disorder requires the integration of imaging, demographic and/or behavioral data in a way that no subject identifiers are included in the de-identified dataset and with new subject labels or identification values that cannot be tracked back to the original ones. We have developed a Java program that users can use to remove identifying information in neuroimaging datasets, while still maintaining the association among different data types from the same subject for further studies. This software provides a series of user interaction wizards to allow users to select data variables to be de-identified, implements functions for auditing and validation of de-identified data, and enables the user to share the de-identified data in a single compressed package through various communication protocols, such as FTPS and SFTP. DeID runs with Windows, Linux, and Mac operating systems and its open architecture allows it to be easily adapted to support a broader array of data types, with the goal of facilitating data sharing. DeID can be obtained at http://www.nitrc.org/projects/deid.
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spelling pubmed-45852072015-10-05 DeID – a data sharing tool for neuroimaging studies Song, Xuebo Wang, James Wang, Anlin Meng, Qingping Prescott, Christian Tsu, Loretta Eckert, Mark A. Front Neurosci Neuroscience Funding institutions and researchers increasingly expect that data will be shared to increase scientific integrity and provide other scientists with the opportunity to use the data with novel methods that may advance understanding in a particular field of study. In practice, sharing human subject data can be complicated because data must be de-identified prior to sharing. Moreover, integrating varied data types collected in a study can be challenging and time consuming. For example, sharing data from structural imaging studies of a complex disorder requires the integration of imaging, demographic and/or behavioral data in a way that no subject identifiers are included in the de-identified dataset and with new subject labels or identification values that cannot be tracked back to the original ones. We have developed a Java program that users can use to remove identifying information in neuroimaging datasets, while still maintaining the association among different data types from the same subject for further studies. This software provides a series of user interaction wizards to allow users to select data variables to be de-identified, implements functions for auditing and validation of de-identified data, and enables the user to share the de-identified data in a single compressed package through various communication protocols, such as FTPS and SFTP. DeID runs with Windows, Linux, and Mac operating systems and its open architecture allows it to be easily adapted to support a broader array of data types, with the goal of facilitating data sharing. DeID can be obtained at http://www.nitrc.org/projects/deid. Frontiers Media S.A. 2015-09-22 /pmc/articles/PMC4585207/ /pubmed/26441500 http://dx.doi.org/10.3389/fnins.2015.00325 Text en Copyright © 2015 Song, Wang, Wang, Meng, Prescott, Tsu and Eckert. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Song, Xuebo
Wang, James
Wang, Anlin
Meng, Qingping
Prescott, Christian
Tsu, Loretta
Eckert, Mark A.
DeID – a data sharing tool for neuroimaging studies
title DeID – a data sharing tool for neuroimaging studies
title_full DeID – a data sharing tool for neuroimaging studies
title_fullStr DeID – a data sharing tool for neuroimaging studies
title_full_unstemmed DeID – a data sharing tool for neuroimaging studies
title_short DeID – a data sharing tool for neuroimaging studies
title_sort deid – a data sharing tool for neuroimaging studies
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585207/
https://www.ncbi.nlm.nih.gov/pubmed/26441500
http://dx.doi.org/10.3389/fnins.2015.00325
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AT prescottchristian deidadatasharingtoolforneuroimagingstudies
AT tsuloretta deidadatasharingtoolforneuroimagingstudies
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