Cargando…

SeqMule: automated pipeline for analysis of human exome/genome sequencing data

Next-generation sequencing (NGS) technology has greatly helped us identify disease-contributory variants for Mendelian diseases. However, users are often faced with issues such as software compatibility, complicated configuration, and no access to high-performance computing facility. Discrepancies e...

Descripción completa

Detalles Bibliográficos
Autores principales:	Guo, Yunfei, Ding, Xiaolei, Shen, Yufeng, Lyon, Gholson J., Wang, Kai
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585643/ https://www.ncbi.nlm.nih.gov/pubmed/26381817 http://dx.doi.org/10.1038/srep14283

Ejemplares similares

Low concordance of multiple variant-calling pipelines: practical implications for exome and genome sequencing
por: O'Rawe, Jason, et al.
Publicado: (2013)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses
por: Rubio-Camarillo, Miriam, et al.
Publicado: (2013)

Reducing INDEL calling errors in whole genome and exome sequencing data
por: Fang, Han, et al.
Publicado: (2014)

BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes
por: Chukamnerd, Arnon, et al.
Publicado: (2023)

OpEx - a validated, automated pipeline optimised for clinical exome sequence analysis
por: Ruark, Elise, et al.
Publicado: (2016)

Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data
por: Gao, Jianing, et al.
Publicado: (2017)

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
por: Barozzi, Iros, et al.
Publicado: (2011)

Mule in action
por: Dossot, David, et al.
Publicado: (2010)

Mule in action
por: Dossot, David, et al.
Publicado: (2014)

SIMPLEX: Cloud-Enabled Pipeline for the Comprehensive Analysis of Exome Sequencing Data
por: Fischer, Maria, et al.
Publicado: (2012)

Genome-wide variant analysis of simplex autism families with an integrative clinical-bioinformatics pipeline
por: Jiménez-Barrón, Laura T., et al.
Publicado: (2015)

Genomics pipelines to investigate susceptibility in whole genome and exome sequenced data for variant discovery, annotation, prediction and genotyping
por: Ahmed, Zeeshan, et al.
Publicado: (2021)

A Population of Deletion Mutants and an Integrated Mapping and Exome-seq Pipeline for Gene Discovery in Maize
por: Jia, Shangang, et al.
Publicado: (2016)

Mary Shortridge Mules
Publicado: (1934)

Trichorrhexis Nodosa in Mules
por: Falotti,
Publicado: (1899)

Coxitis in a Mule
por: Wyman, W. E. A.
Publicado: (1897)

Fully automated pipeline for detection of sex linked genes using RNA-Seq data
por: Michalovova, Monika, et al.
Publicado: (2015)

Multiple Variant Calling Pipelines in Wheat Whole Exome Sequencing
por: Cagirici, H. Busra, et al.
Publicado: (2021)

Impact of concurrency on the performance of a whole exome sequencing pipeline
por: Dall’Olio, Daniele, et al.
Publicado: (2021)

Identifying disease mutations in genomic medicine settings: current challenges and how to accelerate progress
por: Lyon, Gholson J, et al.
Publicado: (2012)

SeqBench: Integrated solution for the management and analysis of exome sequencing data
por: Dander, Andreas, et al.
Publicado: (2014)

EthSEQ: ethnicity annotation from whole exome sequencing data
por: Romanel, Alessandro, et al.
Publicado: (2017)

MEDIPIPE: an automated and comprehensive pipeline for cfMeDIP-seq data quality control and analysis
por: Zeng, Yong, et al.
Publicado: (2023)

damidseq_pipeline: an automated pipeline for processing DamID sequencing datasets
por: Marshall, Owen J., et al.
Publicado: (2015)

SeqHBase: a big data toolset for family based sequencing data analysis
por: He, Min, et al.
Publicado: (2015)

A three-caller pipeline for variant analysis of cancer whole-exome sequencing data
por: Liu, Ze-Kun, et al.
Publicado: (2017)

Correction to: Impact of concurrency on the performance of a whole exome sequencing pipeline
por: Dall’Olio, Daniele, et al.
Publicado: (2021)

Analysis of the Whole-Genome Sequences from an Equus Parent-Offspring Trio Provides Insight into the Genomic Incompatibilities in the Hybrid Mule
por: Ren, Xiujuan, et al.
Publicado: (2022)

Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic Data
por: Robbertse, Barbara, et al.
Publicado: (2011)

Clustered Data Muling in the Internet of Things in Motion†
por: Tuyishimire, Emmanuel, et al.
Publicado: (2019)

Gastrointestinal Disorders of Donkeys and Mules
por: Thiemann, Alexandra K., et al.
Publicado: (2019)

Ulceration of the Œsophagus in a Mule
por: Wheat, L. E.
Publicado: (1881)

RNA-Seq transcriptome data of the liver of common Pekin, Muscovy, mule and Hinny ducks fed ad libitum or overfed
por: Hérault, Frédéric, et al.
Publicado: (2021)

From Wet‐Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing
por: Laurie, Steve, et al.
Publicado: (2016)

Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data
por: Plonski, Noel-Marie, et al.
Publicado: (2020)

Findzx: an automated pipeline for detecting and visualising sex chromosomes using whole-genome sequencing data
por: Sigeman, Hanna, et al.
Publicado: (2022)

Fastq2vcf: a concise and transparent pipeline for whole-exome sequencing data analyses
por: Gao, Xiaoyi, et al.
Publicado: (2015)

Performance assessment of variant calling pipelines using human whole exome sequencing and simulated data
por: Kumaran, Manojkumar, et al.
Publicado: (2019)

Please, God, take care of the mule,
por: Moerkerk de Vries, Lini
Publicado: (1972)

Skin Diseases in Donkeys and Mules—An Update
por: Lima, Telma S., et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_631cintiee1lqj4uus4g7js8vv