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A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber
Thrombus formation is a multiscale phenomenon triggered by platelet deposition over a protrombotic surface (eg. a ruptured atherosclerotic plaque). Despite the medical urgency for computational tools that aid in the early diagnosis of thrombotic events, the integration of computational models of thr...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585733/ https://www.ncbi.nlm.nih.gov/pubmed/26391513 http://dx.doi.org/10.1038/srep13606 |
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author | Pallarès, Jordi Senan, Oriol Guimerà, Roger Vernet, Anton Aguilar-Mogas, Antoni Vilahur, Gemma Badimon, Lina Sales-Pardo, Marta Cito, Salvatore |
author_facet | Pallarès, Jordi Senan, Oriol Guimerà, Roger Vernet, Anton Aguilar-Mogas, Antoni Vilahur, Gemma Badimon, Lina Sales-Pardo, Marta Cito, Salvatore |
author_sort | Pallarès, Jordi |
collection | PubMed |
description | Thrombus formation is a multiscale phenomenon triggered by platelet deposition over a protrombotic surface (eg. a ruptured atherosclerotic plaque). Despite the medical urgency for computational tools that aid in the early diagnosis of thrombotic events, the integration of computational models of thrombus formation at different scales requires a comprehensive understanding of the role and limitation of each modelling approach. We propose three different modelling approaches to predict platelet deposition. Specifically, we consider measurements of platelet deposition under blood flow conditions in a perfusion chamber for different time periods (3, 5, 10, 20 and 30 minutes) at shear rates of 212 s(−1), 1390 s(−1) and 1690 s(−1). Our modelling approaches are: i) a model based on the mass-transfer boundary layer theory; ii) a machine-learning approach; and iii) a phenomenological model. The results indicate that the three approaches on average have median errors of 21%, 20.7% and 14.2%, respectively. Our study demonstrates the feasibility of using an empirical data set as a proxy for a real-patient scenario in which practitioners have accumulated data on a given number of patients and want to obtain a diagnosis for a new patient about whom they only have the current observation of a certain number of variables. |
format | Online Article Text |
id | pubmed-4585733 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-45857332015-09-29 A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber Pallarès, Jordi Senan, Oriol Guimerà, Roger Vernet, Anton Aguilar-Mogas, Antoni Vilahur, Gemma Badimon, Lina Sales-Pardo, Marta Cito, Salvatore Sci Rep Article Thrombus formation is a multiscale phenomenon triggered by platelet deposition over a protrombotic surface (eg. a ruptured atherosclerotic plaque). Despite the medical urgency for computational tools that aid in the early diagnosis of thrombotic events, the integration of computational models of thrombus formation at different scales requires a comprehensive understanding of the role and limitation of each modelling approach. We propose three different modelling approaches to predict platelet deposition. Specifically, we consider measurements of platelet deposition under blood flow conditions in a perfusion chamber for different time periods (3, 5, 10, 20 and 30 minutes) at shear rates of 212 s(−1), 1390 s(−1) and 1690 s(−1). Our modelling approaches are: i) a model based on the mass-transfer boundary layer theory; ii) a machine-learning approach; and iii) a phenomenological model. The results indicate that the three approaches on average have median errors of 21%, 20.7% and 14.2%, respectively. Our study demonstrates the feasibility of using an empirical data set as a proxy for a real-patient scenario in which practitioners have accumulated data on a given number of patients and want to obtain a diagnosis for a new patient about whom they only have the current observation of a certain number of variables. Nature Publishing Group 2015-09-22 /pmc/articles/PMC4585733/ /pubmed/26391513 http://dx.doi.org/10.1038/srep13606 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Pallarès, Jordi Senan, Oriol Guimerà, Roger Vernet, Anton Aguilar-Mogas, Antoni Vilahur, Gemma Badimon, Lina Sales-Pardo, Marta Cito, Salvatore A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title | A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title_full | A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title_fullStr | A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title_full_unstemmed | A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title_short | A comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
title_sort | comprehensive study on different modelling approaches to predict platelet deposition rates in a perfusion chamber |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585733/ https://www.ncbi.nlm.nih.gov/pubmed/26391513 http://dx.doi.org/10.1038/srep13606 |
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