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Information content of contact-pattern representations and predictability of epidemic outbreaks

To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network...

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Autor principal: Holme, Petter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585889/
https://www.ncbi.nlm.nih.gov/pubmed/26403504
http://dx.doi.org/10.1038/srep14462
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author Holme, Petter
author_facet Holme, Petter
author_sort Holme, Petter
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description To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network epidemiology, assumes people are connected into a static network over which the disease spreads. Newer yet, temporal network epidemiology, includes the time in the contact representations. In this paper, we investigate the effect of these successive inclusions of more information. Using empirical proximity data, we study both outbreak sizes from unknown sources, and from known states of ongoing outbreaks. In the first case, there are large differences going from a fully mixed simulation to a network, and from a network to a temporal network. In the second case, differences are smaller. We interpret these observations in terms of the temporal network structure of the data sets. For example, a fast overturn of nodes and links seem to make the temporal information more important.
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spelling pubmed-45858892015-09-30 Information content of contact-pattern representations and predictability of epidemic outbreaks Holme, Petter Sci Rep Article To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network epidemiology, assumes people are connected into a static network over which the disease spreads. Newer yet, temporal network epidemiology, includes the time in the contact representations. In this paper, we investigate the effect of these successive inclusions of more information. Using empirical proximity data, we study both outbreak sizes from unknown sources, and from known states of ongoing outbreaks. In the first case, there are large differences going from a fully mixed simulation to a network, and from a network to a temporal network. In the second case, differences are smaller. We interpret these observations in terms of the temporal network structure of the data sets. For example, a fast overturn of nodes and links seem to make the temporal information more important. Nature Publishing Group 2015-09-25 /pmc/articles/PMC4585889/ /pubmed/26403504 http://dx.doi.org/10.1038/srep14462 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Holme, Petter
Information content of contact-pattern representations and predictability of epidemic outbreaks
title Information content of contact-pattern representations and predictability of epidemic outbreaks
title_full Information content of contact-pattern representations and predictability of epidemic outbreaks
title_fullStr Information content of contact-pattern representations and predictability of epidemic outbreaks
title_full_unstemmed Information content of contact-pattern representations and predictability of epidemic outbreaks
title_short Information content of contact-pattern representations and predictability of epidemic outbreaks
title_sort information content of contact-pattern representations and predictability of epidemic outbreaks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585889/
https://www.ncbi.nlm.nih.gov/pubmed/26403504
http://dx.doi.org/10.1038/srep14462
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