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Information content of contact-pattern representations and predictability of epidemic outbreaks
To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585889/ https://www.ncbi.nlm.nih.gov/pubmed/26403504 http://dx.doi.org/10.1038/srep14462 |
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author | Holme, Petter |
author_facet | Holme, Petter |
author_sort | Holme, Petter |
collection | PubMed |
description | To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network epidemiology, assumes people are connected into a static network over which the disease spreads. Newer yet, temporal network epidemiology, includes the time in the contact representations. In this paper, we investigate the effect of these successive inclusions of more information. Using empirical proximity data, we study both outbreak sizes from unknown sources, and from known states of ongoing outbreaks. In the first case, there are large differences going from a fully mixed simulation to a network, and from a network to a temporal network. In the second case, differences are smaller. We interpret these observations in terms of the temporal network structure of the data sets. For example, a fast overturn of nodes and links seem to make the temporal information more important. |
format | Online Article Text |
id | pubmed-4585889 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-45858892015-09-30 Information content of contact-pattern representations and predictability of epidemic outbreaks Holme, Petter Sci Rep Article To understand the contact patterns of a population—who is in contact with whom, and when the contacts happen—is crucial for modeling outbreaks of infectious disease. Traditional theoretical epidemiology assumes that any individual can meet any with equal probability. A more modern approach, network epidemiology, assumes people are connected into a static network over which the disease spreads. Newer yet, temporal network epidemiology, includes the time in the contact representations. In this paper, we investigate the effect of these successive inclusions of more information. Using empirical proximity data, we study both outbreak sizes from unknown sources, and from known states of ongoing outbreaks. In the first case, there are large differences going from a fully mixed simulation to a network, and from a network to a temporal network. In the second case, differences are smaller. We interpret these observations in terms of the temporal network structure of the data sets. For example, a fast overturn of nodes and links seem to make the temporal information more important. Nature Publishing Group 2015-09-25 /pmc/articles/PMC4585889/ /pubmed/26403504 http://dx.doi.org/10.1038/srep14462 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Holme, Petter Information content of contact-pattern representations and predictability of epidemic outbreaks |
title | Information content of contact-pattern representations and predictability of epidemic outbreaks |
title_full | Information content of contact-pattern representations and predictability of epidemic outbreaks |
title_fullStr | Information content of contact-pattern representations and predictability of epidemic outbreaks |
title_full_unstemmed | Information content of contact-pattern representations and predictability of epidemic outbreaks |
title_short | Information content of contact-pattern representations and predictability of epidemic outbreaks |
title_sort | information content of contact-pattern representations and predictability of epidemic outbreaks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585889/ https://www.ncbi.nlm.nih.gov/pubmed/26403504 http://dx.doi.org/10.1038/srep14462 |
work_keys_str_mv | AT holmepetter informationcontentofcontactpatternrepresentationsandpredictabilityofepidemicoutbreaks |