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Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola
The aim of the present study is to apply simple ODE models in the area of modeling the spread of emerging infectious diseases and show the importance of model selection in estimating parameters, the basic reproduction number, turning point, and final size. To quantify the plausibility of each model,...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586906/ https://www.ncbi.nlm.nih.gov/pubmed/26451161 http://dx.doi.org/10.1155/2015/207105 |
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author | Liu, Wendi Tang, Sanyi Xiao, Yanni |
author_facet | Liu, Wendi Tang, Sanyi Xiao, Yanni |
author_sort | Liu, Wendi |
collection | PubMed |
description | The aim of the present study is to apply simple ODE models in the area of modeling the spread of emerging infectious diseases and show the importance of model selection in estimating parameters, the basic reproduction number, turning point, and final size. To quantify the plausibility of each model, given the data and the set of four models including Logistic, Gompertz, Rosenzweg, and Richards models, the Bayes factors are calculated and the precise estimates of the best fitted model parameters and key epidemic characteristics have been obtained. In particular, for Ebola the basic reproduction numbers are 1.3522 (95% CI (1.3506, 1.3537)), 1.2101 (95% CI (1.2084, 1.2119)), 3.0234 (95% CI (2.6063, 3.4881)), and 1.9018 (95% CI (1.8565, 1.9478)), the turning points are November 7,November 17, October 2, and November 3, 2014, and the final sizes until December 2015 are 25794 (95% CI (25630, 25958)), 3916 (95% CI (3865, 3967)), 9886 (95% CI (9740, 10031)), and 12633 (95% CI (12515, 12750)) for West Africa, Guinea, Liberia, and Sierra Leone, respectively. The main results confirm that model selection is crucial in evaluating and predicting the important quantities describing the emerging infectious diseases, and arbitrarily picking a model without any consideration of alternatives is problematic. |
format | Online Article Text |
id | pubmed-4586906 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-45869062015-10-08 Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola Liu, Wendi Tang, Sanyi Xiao, Yanni Comput Math Methods Med Research Article The aim of the present study is to apply simple ODE models in the area of modeling the spread of emerging infectious diseases and show the importance of model selection in estimating parameters, the basic reproduction number, turning point, and final size. To quantify the plausibility of each model, given the data and the set of four models including Logistic, Gompertz, Rosenzweg, and Richards models, the Bayes factors are calculated and the precise estimates of the best fitted model parameters and key epidemic characteristics have been obtained. In particular, for Ebola the basic reproduction numbers are 1.3522 (95% CI (1.3506, 1.3537)), 1.2101 (95% CI (1.2084, 1.2119)), 3.0234 (95% CI (2.6063, 3.4881)), and 1.9018 (95% CI (1.8565, 1.9478)), the turning points are November 7,November 17, October 2, and November 3, 2014, and the final sizes until December 2015 are 25794 (95% CI (25630, 25958)), 3916 (95% CI (3865, 3967)), 9886 (95% CI (9740, 10031)), and 12633 (95% CI (12515, 12750)) for West Africa, Guinea, Liberia, and Sierra Leone, respectively. The main results confirm that model selection is crucial in evaluating and predicting the important quantities describing the emerging infectious diseases, and arbitrarily picking a model without any consideration of alternatives is problematic. Hindawi Publishing Corporation 2015 2015-09-15 /pmc/articles/PMC4586906/ /pubmed/26451161 http://dx.doi.org/10.1155/2015/207105 Text en Copyright © 2015 Wendi Liu et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Liu, Wendi Tang, Sanyi Xiao, Yanni Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title | Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title_full | Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title_fullStr | Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title_full_unstemmed | Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title_short | Model Selection and Evaluation Based on Emerging Infectious Disease Data Sets including A/H1N1 and Ebola |
title_sort | model selection and evaluation based on emerging infectious disease data sets including a/h1n1 and ebola |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4586906/ https://www.ncbi.nlm.nih.gov/pubmed/26451161 http://dx.doi.org/10.1155/2015/207105 |
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