Cargando…

VEGAWES: variational segmentation on whole exome sequencing for copy number detection

BACKGROUND: Copy number variations are important in the detection and progression of significant tumors and diseases. Recently, Whole Exome Sequencing is gaining popularity with copy number variations detection due to low cost and better efficiency. In this work, we developed VEGAWES for accurate an...

Descripción completa

Detalles Bibliográficos
Autores principales:	Anjum, Samreen, Morganella, Sandro, D’Angelo, Fulvio, Iavarone, Antonio, Ceccarelli, Michele
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4587906/ https://www.ncbi.nlm.nih.gov/pubmed/26416038 http://dx.doi.org/10.1186/s12859-015-0748-0

Ejemplares similares

RefCNV: Identification of Gene-Based Copy Number Variants Using Whole Exome Sequencing
por: Chang, Lun-Ching, et al.
Publicado: (2016)

TimeDelay-ARACNE: Reverse engineering of gene networks from time-course data by an information theoretic approach
por: Zoppoli, Pietro, et al.
Publicado: (2010)

Inferring copy number and genotype in tumour exome data
por: Amarasinghe, Kaushalya C, et al.
Publicado: (2014)

Simple binary segmentation frameworks for identifying variation in DNA copy number
por: Yang, Tae Young
Publicado: (2012)

Noise cancellation using total variation for copy number variation detection
por: Zare, Fatima, et al.
Publicado: (2018)

CloneCNA: detecting subclonal somatic copy number alterations in heterogeneous tumor samples from whole-exome sequencing data
por: Yu, Zhenhua, et al.
Publicado: (2016)

Copy number variation analysis based on AluScan sequences
por: Yang, Jian-Feng, et al.
Publicado: (2014)

Identification of Medium-Sized Copy Number Alterations in Whole-Genome Sequencing
por: Ozer, Hatice Gulcin, et al.
Publicado: (2015)

Development of copy number assays for detection and surveillance of piperaquine resistance associated plasmepsin 2/3 copy number variation in Plasmodium falciparum
por: Ansbro, Megan R., et al.
Publicado: (2020)

CODEX: a normalization and copy number variation detection method for whole exome sequencing
por: Jiang, Yuchao, et al.
Publicado: (2015)

inCNV: An Integrated Analysis Tool for Copy Number Variation on Whole Exome Sequencing
por: Chanwigoon, Saowwapark, et al.
Publicado: (2020)

Comparative study of whole exome sequencing-based copy number variation detection tools
por: Zhao, Lanling, et al.
Publicado: (2020)

Reconstructing DNA copy number by joint segmentation of multiple sequences
por: Zhang, Zhongyang, et al.
Publicado: (2012)

Assessing the reproducibility of exome copy number variations predictions
por: Hong, Celine S., et al.
Publicado: (2016)

Copy number variation signature to predict human ancestry
por: Pronold, Melissa, et al.
Publicado: (2012)

Copy number variation genotyping using family information
por: Chu, Jen-hwa, et al.
Publicado: (2013)

A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data
por: De Falco, Antonio, et al.
Publicado: (2023)

An evaluation of copy number variation detection tools for cancer using whole exome sequencing data
por: Zare, Fatima, et al.
Publicado: (2017)

A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data
por: Gabrielaite, Migle, et al.
Publicado: (2021)

A Novel Graph-based Algorithm to Infer Recurrent Copy Number Variations in Cancer
por: Chi, Chen, et al.
Publicado: (2016)

Effective normalization for copy number variation in Hi-C data
por: Servant, Nicolas, et al.
Publicado: (2018)

DBS: a fast and informative segmentation algorithm for DNA copy number analysis
por: Ruan, Jun, et al.
Publicado: (2019)

Allele-specific copy-number discovery from whole-genome and whole-exome sequencing
por: Wang, WeiBo, et al.
Publicado: (2015)

Copy number alterations detected by whole-exome and whole-genome sequencing of esophageal adenocarcinoma
por: Wang, Xiaoyu, et al.
Publicado: (2015)

Copy number variation detection and genotyping from exome sequence data
por: Krumm, Niklas, et al.
Publicado: (2012)

WISExome: a within-sample comparison approach to detect copy number variations in whole exome sequencing data
por: Straver, Roy, et al.
Publicado: (2017)

ExCNVSS: A Noise-Robust Method for Copy Number Variation Detection in Whole Exome Sequencing Data
por: Kong, Jinhwa, et al.
Publicado: (2017)

Whole exome sequencing in the rat
por: Foley, Julie F., et al.
Publicado: (2018)

Fast MCMC sampling for hidden markov models to determine copy number variations
por: Mahmud, Md Pavel, et al.
Publicado: (2011)

CopyDetective: Detection threshold–aware copy number variant calling in whole-exome sequencing data
por: Sandmann, Sarah, et al.
Publicado: (2020)

EXCAVATOR: detecting copy number variants from whole-exome sequencing data
por: Magi, Alberto, et al.
Publicado: (2013)

Platform comparison of detecting copy number variants with microarrays and whole-exome sequencing
por: de Ligt, Joep, et al.
Publicado: (2014)

Whole-Exome Sequencing and Targeted Copy Number Analysis in Primary Ciliary Dyskinesia
por: Marshall, Christian R., et al.
Publicado: (2015)

Sacral agenesis: a pilot whole exome sequencing and copy number study
por: Porsch, Robert M., et al.
Publicado: (2016)

Integrated Analysis of Whole Exome Sequencing and Copy Number Evaluation in Parkinson’s Disease
por: Yemni, Eman Al, et al.
Publicado: (2019)

Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays
por: Auer, Herbert, et al.
Publicado: (2007)

Genome-wide analysis of copy number alterations led to the characterisation of PDCD10 as oncogene in ovarian cancer
por: De Marco, Carmela, et al.
Publicado: (2021)

In silico molecular cytogenetics: a bioinformatic approach to prioritization of candidate genes and copy number variations for basic and clinical genome research
por: Iourov, Ivan Y, et al.
Publicado: (2014)

Exome and copy number variation analyses of Mayer–Rokitansky–Küster– Hauser syndrome
por: Takahashi, Kazumi, et al.
Publicado: (2018)

CANOES: detecting rare copy number variants from whole exome sequencing data
por: Backenroth, Daniel, et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_faaonhjmhp2jik525k5st85bg8