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Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci

Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873...

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Autores principales: Stafford-Smith, Mark, Li, Yi-Ju, Mathew, Joseph P., Li, Yen-Wei, Ji, Yunqi, Phillips-Bute, Barbara, Milano, Carmelo A., Newman, Mark F., Kraus, William E., Kertai, Miklos D., Shah, Svati H., Podgoreanu, Mihai V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589439/
https://www.ncbi.nlm.nih.gov/pubmed/26083657
http://dx.doi.org/10.1038/ki.2015.161
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author Stafford-Smith, Mark
Li, Yi-Ju
Mathew, Joseph P.
Li, Yen-Wei
Ji, Yunqi
Phillips-Bute, Barbara
Milano, Carmelo A.
Newman, Mark F.
Kraus, William E.
Kertai, Miklos D.
Shah, Svati H.
Podgoreanu, Mihai V.
author_facet Stafford-Smith, Mark
Li, Yi-Ju
Mathew, Joseph P.
Li, Yen-Wei
Ji, Yunqi
Phillips-Bute, Barbara
Milano, Carmelo A.
Newman, Mark F.
Kraus, William E.
Kertai, Miklos D.
Shah, Svati H.
Podgoreanu, Mihai V.
author_sort Stafford-Smith, Mark
collection PubMed
description Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873 non-emergent CABG surgery patients with cardiopulmonary bypass (PEGASUS), while a replication dataset had 380 cardiac surgical patients (CATHGEN). Single nucleotide polymorphism (SNP) data were based on Illumina Human610-Quad (PEGASUS) and OMNI1-Quad (CATHGEN) BeadChips. We used linear regression with adjustment for a clinical AKI risk score to test SNP associations with the postoperative peak rise relative to preoperative serum creatinine concentration as a quantitative AKI trait. Nine SNPs meeting significance in the discovery set were detected. The rs13317787 in GRM7|LMCD1-AS1 intergenic region (3p21.6) and rs10262995 in BBS9 (7p14.3) were replicated with significance in the CATHGEN data set and exhibited significantly strong overall association following meta-analysis. Additional fine-mapping using imputed SNPs across these two regions and meta-analysis found genome wide significance at the GRM7|LMCD1-AS1 locus and a significantly strong association at BBS9. Thus, through an unbiased GWAS approach, we found two new loci associated with post-CABG AKI providing new insights into the pathogenesis of perioperative AKI.
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spelling pubmed-45894392016-04-01 Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci Stafford-Smith, Mark Li, Yi-Ju Mathew, Joseph P. Li, Yen-Wei Ji, Yunqi Phillips-Bute, Barbara Milano, Carmelo A. Newman, Mark F. Kraus, William E. Kertai, Miklos D. Shah, Svati H. Podgoreanu, Mihai V. Kidney Int Article Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873 non-emergent CABG surgery patients with cardiopulmonary bypass (PEGASUS), while a replication dataset had 380 cardiac surgical patients (CATHGEN). Single nucleotide polymorphism (SNP) data were based on Illumina Human610-Quad (PEGASUS) and OMNI1-Quad (CATHGEN) BeadChips. We used linear regression with adjustment for a clinical AKI risk score to test SNP associations with the postoperative peak rise relative to preoperative serum creatinine concentration as a quantitative AKI trait. Nine SNPs meeting significance in the discovery set were detected. The rs13317787 in GRM7|LMCD1-AS1 intergenic region (3p21.6) and rs10262995 in BBS9 (7p14.3) were replicated with significance in the CATHGEN data set and exhibited significantly strong overall association following meta-analysis. Additional fine-mapping using imputed SNPs across these two regions and meta-analysis found genome wide significance at the GRM7|LMCD1-AS1 locus and a significantly strong association at BBS9. Thus, through an unbiased GWAS approach, we found two new loci associated with post-CABG AKI providing new insights into the pathogenesis of perioperative AKI. 2015-06-17 2015-10 /pmc/articles/PMC4589439/ /pubmed/26083657 http://dx.doi.org/10.1038/ki.2015.161 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Stafford-Smith, Mark
Li, Yi-Ju
Mathew, Joseph P.
Li, Yen-Wei
Ji, Yunqi
Phillips-Bute, Barbara
Milano, Carmelo A.
Newman, Mark F.
Kraus, William E.
Kertai, Miklos D.
Shah, Svati H.
Podgoreanu, Mihai V.
Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title_full Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title_fullStr Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title_full_unstemmed Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title_short Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
title_sort genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589439/
https://www.ncbi.nlm.nih.gov/pubmed/26083657
http://dx.doi.org/10.1038/ki.2015.161
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