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Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci
Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589439/ https://www.ncbi.nlm.nih.gov/pubmed/26083657 http://dx.doi.org/10.1038/ki.2015.161 |
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author | Stafford-Smith, Mark Li, Yi-Ju Mathew, Joseph P. Li, Yen-Wei Ji, Yunqi Phillips-Bute, Barbara Milano, Carmelo A. Newman, Mark F. Kraus, William E. Kertai, Miklos D. Shah, Svati H. Podgoreanu, Mihai V. |
author_facet | Stafford-Smith, Mark Li, Yi-Ju Mathew, Joseph P. Li, Yen-Wei Ji, Yunqi Phillips-Bute, Barbara Milano, Carmelo A. Newman, Mark F. Kraus, William E. Kertai, Miklos D. Shah, Svati H. Podgoreanu, Mihai V. |
author_sort | Stafford-Smith, Mark |
collection | PubMed |
description | Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873 non-emergent CABG surgery patients with cardiopulmonary bypass (PEGASUS), while a replication dataset had 380 cardiac surgical patients (CATHGEN). Single nucleotide polymorphism (SNP) data were based on Illumina Human610-Quad (PEGASUS) and OMNI1-Quad (CATHGEN) BeadChips. We used linear regression with adjustment for a clinical AKI risk score to test SNP associations with the postoperative peak rise relative to preoperative serum creatinine concentration as a quantitative AKI trait. Nine SNPs meeting significance in the discovery set were detected. The rs13317787 in GRM7|LMCD1-AS1 intergenic region (3p21.6) and rs10262995 in BBS9 (7p14.3) were replicated with significance in the CATHGEN data set and exhibited significantly strong overall association following meta-analysis. Additional fine-mapping using imputed SNPs across these two regions and meta-analysis found genome wide significance at the GRM7|LMCD1-AS1 locus and a significantly strong association at BBS9. Thus, through an unbiased GWAS approach, we found two new loci associated with post-CABG AKI providing new insights into the pathogenesis of perioperative AKI. |
format | Online Article Text |
id | pubmed-4589439 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
record_format | MEDLINE/PubMed |
spelling | pubmed-45894392016-04-01 Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci Stafford-Smith, Mark Li, Yi-Ju Mathew, Joseph P. Li, Yen-Wei Ji, Yunqi Phillips-Bute, Barbara Milano, Carmelo A. Newman, Mark F. Kraus, William E. Kertai, Miklos D. Shah, Svati H. Podgoreanu, Mihai V. Kidney Int Article Acute kidney injury (AKI) is a common, serious complication of cardiac surgery. Since prior studies have supported a genetic basis for postoperative AKI, we conducted a genome-wide association study (GWAS) for AKI following coronary bypass graft (CABG) surgery. The discovery dataset consisted of 873 non-emergent CABG surgery patients with cardiopulmonary bypass (PEGASUS), while a replication dataset had 380 cardiac surgical patients (CATHGEN). Single nucleotide polymorphism (SNP) data were based on Illumina Human610-Quad (PEGASUS) and OMNI1-Quad (CATHGEN) BeadChips. We used linear regression with adjustment for a clinical AKI risk score to test SNP associations with the postoperative peak rise relative to preoperative serum creatinine concentration as a quantitative AKI trait. Nine SNPs meeting significance in the discovery set were detected. The rs13317787 in GRM7|LMCD1-AS1 intergenic region (3p21.6) and rs10262995 in BBS9 (7p14.3) were replicated with significance in the CATHGEN data set and exhibited significantly strong overall association following meta-analysis. Additional fine-mapping using imputed SNPs across these two regions and meta-analysis found genome wide significance at the GRM7|LMCD1-AS1 locus and a significantly strong association at BBS9. Thus, through an unbiased GWAS approach, we found two new loci associated with post-CABG AKI providing new insights into the pathogenesis of perioperative AKI. 2015-06-17 2015-10 /pmc/articles/PMC4589439/ /pubmed/26083657 http://dx.doi.org/10.1038/ki.2015.161 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Stafford-Smith, Mark Li, Yi-Ju Mathew, Joseph P. Li, Yen-Wei Ji, Yunqi Phillips-Bute, Barbara Milano, Carmelo A. Newman, Mark F. Kraus, William E. Kertai, Miklos D. Shah, Svati H. Podgoreanu, Mihai V. Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title | Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title_full | Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title_fullStr | Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title_full_unstemmed | Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title_short | Genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
title_sort | genome-wide association study of acute kidney injury after coronary bypass graft surgery identifies susceptibility loci |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4589439/ https://www.ncbi.nlm.nih.gov/pubmed/26083657 http://dx.doi.org/10.1038/ki.2015.161 |
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