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Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image

BACKGROUND: The detection of the glomeruli is a key step in the histopathological evaluation of microscopic images of the kidneys. However, the task of automatic detection of the glomeruli poses challenges owing to the differences in their sizes and shapes in renal sections as well as the extensive...

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Autores principales: Kato, Tsuyoshi, Relator, Raissa, Ngouv, Hayliang, Hirohashi, Yoshihiro, Takaki, Osamu, Kakimoto, Tetsuhiro, Okada, Kinya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590714/
https://www.ncbi.nlm.nih.gov/pubmed/26423821
http://dx.doi.org/10.1186/s12859-015-0739-1
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author Kato, Tsuyoshi
Relator, Raissa
Ngouv, Hayliang
Hirohashi, Yoshihiro
Takaki, Osamu
Kakimoto, Tetsuhiro
Okada, Kinya
author_facet Kato, Tsuyoshi
Relator, Raissa
Ngouv, Hayliang
Hirohashi, Yoshihiro
Takaki, Osamu
Kakimoto, Tetsuhiro
Okada, Kinya
author_sort Kato, Tsuyoshi
collection PubMed
description BACKGROUND: The detection of the glomeruli is a key step in the histopathological evaluation of microscopic images of the kidneys. However, the task of automatic detection of the glomeruli poses challenges owing to the differences in their sizes and shapes in renal sections as well as the extensive variations in their intensities due to heterogeneity in immunohistochemistry staining. Although the rectangular histogram of oriented gradients (Rectangular HOG) is a widely recognized powerful descriptor for general object detection, it shows many false positives owing to the aforementioned difficulties in the context of glomeruli detection. RESULTS: A new descriptor referred to as Segmental HOG was developed to perform a comprehensive detection of hundreds of glomeruli in images of whole kidney sections. The new descriptor possesses flexible blocks that can be adaptively fitted to input images in order to acquire robustness for the detection of the glomeruli. Moreover, the novel segmentation technique employed herewith generates high-quality segmentation outputs, and the algorithm is assured to converge to an optimal solution. Consequently, experiments using real-world image data revealed that Segmental HOG achieved significant improvements in detection performance compared to Rectangular HOG. CONCLUSION: The proposed descriptor for glomeruli detection presents promising results, and it is expected to be useful in pathological evaluation.
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spelling pubmed-45907142015-10-02 Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image Kato, Tsuyoshi Relator, Raissa Ngouv, Hayliang Hirohashi, Yoshihiro Takaki, Osamu Kakimoto, Tetsuhiro Okada, Kinya BMC Bioinformatics Research Article BACKGROUND: The detection of the glomeruli is a key step in the histopathological evaluation of microscopic images of the kidneys. However, the task of automatic detection of the glomeruli poses challenges owing to the differences in their sizes and shapes in renal sections as well as the extensive variations in their intensities due to heterogeneity in immunohistochemistry staining. Although the rectangular histogram of oriented gradients (Rectangular HOG) is a widely recognized powerful descriptor for general object detection, it shows many false positives owing to the aforementioned difficulties in the context of glomeruli detection. RESULTS: A new descriptor referred to as Segmental HOG was developed to perform a comprehensive detection of hundreds of glomeruli in images of whole kidney sections. The new descriptor possesses flexible blocks that can be adaptively fitted to input images in order to acquire robustness for the detection of the glomeruli. Moreover, the novel segmentation technique employed herewith generates high-quality segmentation outputs, and the algorithm is assured to converge to an optimal solution. Consequently, experiments using real-world image data revealed that Segmental HOG achieved significant improvements in detection performance compared to Rectangular HOG. CONCLUSION: The proposed descriptor for glomeruli detection presents promising results, and it is expected to be useful in pathological evaluation. BioMed Central 2015-09-30 /pmc/articles/PMC4590714/ /pubmed/26423821 http://dx.doi.org/10.1186/s12859-015-0739-1 Text en © Kato et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Kato, Tsuyoshi
Relator, Raissa
Ngouv, Hayliang
Hirohashi, Yoshihiro
Takaki, Osamu
Kakimoto, Tetsuhiro
Okada, Kinya
Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title_full Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title_fullStr Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title_full_unstemmed Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title_short Segmental HOG: new descriptor for glomerulus detection in kidney microscopy image
title_sort segmental hog: new descriptor for glomerulus detection in kidney microscopy image
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4590714/
https://www.ncbi.nlm.nih.gov/pubmed/26423821
http://dx.doi.org/10.1186/s12859-015-0739-1
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