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Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives

The Rosoideae is a subfamily of the Rosaceae that contains a number of species of economic importance, including the soft fruit species strawberry (Fragaria ×ananassa), red (Rubus idaeus) and black (Rubus occidentalis) raspberries, blackberries (Rubus spp.) and one of the most economically important...

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Autores principales: Longhi, Sara, Giongo, Lara, Buti, Matteo, Surbanovski, Nada, Viola, Roberto, Velasco, Riccardo, Ward, Judson A, Sargent, Daniel J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4591673/
https://www.ncbi.nlm.nih.gov/pubmed/26504527
http://dx.doi.org/10.1038/hortres.2014.1
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author Longhi, Sara
Giongo, Lara
Buti, Matteo
Surbanovski, Nada
Viola, Roberto
Velasco, Riccardo
Ward, Judson A
Sargent, Daniel J
author_facet Longhi, Sara
Giongo, Lara
Buti, Matteo
Surbanovski, Nada
Viola, Roberto
Velasco, Riccardo
Ward, Judson A
Sargent, Daniel J
author_sort Longhi, Sara
collection PubMed
description The Rosoideae is a subfamily of the Rosaceae that contains a number of species of economic importance, including the soft fruit species strawberry (Fragaria ×ananassa), red (Rubus idaeus) and black (Rubus occidentalis) raspberries, blackberries (Rubus spp.) and one of the most economically important cut flower genera, the roses (Rosa spp.). Molecular genetics and genomics resources for the Rosoideae have developed rapidly over the past two decades, beginning with the development and application of a number of molecular marker types including restriction fragment length polymorphisms, amplified fragment length polymorphisms and microsatellites, and culminating in the recent publication of the genome sequence of the woodland strawberry, Fragaria vesca, and the development of high throughput single nucleotide polymorphism (SNP)-genotyping resources for Fragaria, Rosa and Rubus. These tools have been used to identify genes and other functional elements that control traits of economic importance, to study the evolution of plant genome structure within the subfamily, and are beginning to facilitate genomic-assisted breeding through the development and deployment of markers linked to traits such as aspects of fruit quality, disease resistance and the timing of flowering. In this review, we report on the developments that have been made over the last 20 years in the field of molecular genetics and structural genomics within the Rosoideae, comment on how the knowledge gained will improve the efficiency of cultivar development and discuss how these advances will enhance our understanding of the biological processes determining agronomically important traits in all Rosoideae species.
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spelling pubmed-45916732015-10-26 Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives Longhi, Sara Giongo, Lara Buti, Matteo Surbanovski, Nada Viola, Roberto Velasco, Riccardo Ward, Judson A Sargent, Daniel J Hortic Res Review Article The Rosoideae is a subfamily of the Rosaceae that contains a number of species of economic importance, including the soft fruit species strawberry (Fragaria ×ananassa), red (Rubus idaeus) and black (Rubus occidentalis) raspberries, blackberries (Rubus spp.) and one of the most economically important cut flower genera, the roses (Rosa spp.). Molecular genetics and genomics resources for the Rosoideae have developed rapidly over the past two decades, beginning with the development and application of a number of molecular marker types including restriction fragment length polymorphisms, amplified fragment length polymorphisms and microsatellites, and culminating in the recent publication of the genome sequence of the woodland strawberry, Fragaria vesca, and the development of high throughput single nucleotide polymorphism (SNP)-genotyping resources for Fragaria, Rosa and Rubus. These tools have been used to identify genes and other functional elements that control traits of economic importance, to study the evolution of plant genome structure within the subfamily, and are beginning to facilitate genomic-assisted breeding through the development and deployment of markers linked to traits such as aspects of fruit quality, disease resistance and the timing of flowering. In this review, we report on the developments that have been made over the last 20 years in the field of molecular genetics and structural genomics within the Rosoideae, comment on how the knowledge gained will improve the efficiency of cultivar development and discuss how these advances will enhance our understanding of the biological processes determining agronomically important traits in all Rosoideae species. Nature Publishing Group 2014-01-22 /pmc/articles/PMC4591673/ /pubmed/26504527 http://dx.doi.org/10.1038/hortres.2014.1 Text en Copyright © 2013 Nanjing Agricultural University http://creativecommons.org/licenses/by-nc-nd/3.0/ This work is licensed under a Creative Commons Attribution 3.0 Unported License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc-nd/3.0/
spellingShingle Review Article
Longhi, Sara
Giongo, Lara
Buti, Matteo
Surbanovski, Nada
Viola, Roberto
Velasco, Riccardo
Ward, Judson A
Sargent, Daniel J
Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title_full Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title_fullStr Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title_full_unstemmed Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title_short Molecular genetics and genomics of the Rosoideae: state of the art and future perspectives
title_sort molecular genetics and genomics of the rosoideae: state of the art and future perspectives
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4591673/
https://www.ncbi.nlm.nih.gov/pubmed/26504527
http://dx.doi.org/10.1038/hortres.2014.1
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