Cargando…

mlstdbNet – distributed multi-locus sequence typing (MLST) databases

BACKGROUND: Multi-locus sequence typing (MLST) is a method of typing that facilitates the discrimination of microbial isolates by comparing the sequences of housekeeping gene fragments. The mlstdbNet software enables the implementation of distributed web-accessible MLST databases that can be linked...

Descripción completa

Detalles Bibliográficos
Autores principales:	Jolley, Keith A, Chan, Man-Suen, Maiden, Martin CJ
Formato:	Texto
Lenguaje:	English
Publicado:	BioMed Central 2004
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC459212/ https://www.ncbi.nlm.nih.gov/pubmed/15230973 http://dx.doi.org/10.1186/1471-2105-5-86

Ejemplares similares

AgdbNet – antigen sequence database software for bacterial typing
por: Jolley, Keith A, et al.
Publicado: (2006)

Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications
por: Jolley, Keith A., et al.
Publicado: (2018)

BIGSdb: Scalable analysis of bacterial genome variation at the population level
por: Jolley, Keith A, et al.
Publicado: (2010)

A RESTful application programming interface for the PubMLST molecular typing and genome databases
por: Jolley, Keith A., et al.
Publicado: (2017)

A Gene-By-Gene Approach to Bacterial Population Genomics: Whole Genome MLST of Campylobacter
por: Sheppard, Samuel K., et al.
Publicado: (2012)

Ribosomal MLST nucleotide identity (rMLST-NI), a rapid bacterial species identification method: application to Klebsiella and Raoultella genomic species validation
por: Bray, James E., et al.
Publicado: (2022)

An MLST approach to support tracking of plasmids carrying OXA-48-like carbapenemase
por: Brehony, Carina, et al.
Publicado: (2019)

Linking Cytoscape and the corynebacterial reference database CoryneRegNet
por: Baumbach, Jan, et al.
Publicado: (2008)

A public database for the new MLST scheme for Treponema pallidum subsp. pallidum: surveillance and epidemiology of the causative agent of syphilis
por: Grillova, Linda, et al.
Publicado: (2019)

Persistence of Hyperinvasive Meningococcal Strain Types during Global Spread as Recorded in the PubMLST Database
por: Watkins, Eleanor R., et al.
Publicado: (2012)

InterferenceAnalyzer: Tools for the analysis and simulation of multi-locus genetic data
por: Viswanath, Lalitha, et al.
Publicado: (2005)

The multilocus sequence typing network: mlst.net
por: Aanensen, David M., et al.
Publicado: (2005)

MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
por: Zolfo, Moreno, et al.
Publicado: (2017)

Short read sequence typing (SRST): multi-locus sequence types from short reads
por: Inouye, Michael, et al.
Publicado: (2012)

STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data
por: Dalsass, Mattia, et al.
Publicado: (2019)

The Applied Development of a Tiered Multilocus Sequence Typing (MLST) Scheme for Dichelobacter nodosus
por: Blanchard, Adam M., et al.
Publicado: (2018)

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST)
por: Dowd, Scot E, et al.
Publicado: (2005)

Genotyping of B. licheniformis based on a novel multi-locus sequence typing (MLST) scheme
por: Madslien, Elisabeth H, et al.
Publicado: (2012)

ODG: Omics database generator - a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding
por: Guhlin, Joseph, et al.
Publicado: (2017)

Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping
por: Gits-Muselli, Maud, et al.
Publicado: (2020)

SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases
por: Chiba, Hirokazu, et al.
Publicado: (2017)

The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database
por: Paley, Suzanne, et al.
Publicado: (2019)

Cronobacter, the emergent bacterial pathogen Enterobacter sakazakii comes of age; MLST and whole genome sequence analysis
por: Forsythe, Stephen J, et al.
Publicado: (2014)

Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
por: Pearce, Madison E., et al.
Publicado: (2018)

An integrated computational pipeline and database to support whole-genome sequence annotation
por: Mungall, CJ, et al.
Publicado: (2002)

Iranian clonal population of Salmonella enterica serovar Enteritidis, characterized by multi-locus sequence typing (MLST) method
por: Ghaderi, Rainak, et al.
Publicado: (2015)

AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential
por: Alanjary, Mohammad, et al.
Publicado: (2019)

eNetXplorer: an R package for the quantitative exploration of elastic net families for generalized linear models
por: Candia, Julián, et al.
Publicado: (2019)

cgMLST characterisation of invasive Neisseria meningitidis serogroup C and W strains associated with increasing disease incidence in the Republic of Ireland
por: Mulhall, Robert M., et al.
Publicado: (2019)

Characterization of phylogenetic networks with NetTest
por: Arenas, Miguel, et al.
Publicado: (2010)

Comparative Analysis of the Two Acinetobacter baumannii Multilocus Sequence Typing (MLST) Schemes
por: Gaiarsa, Stefano, et al.
Publicado: (2019)

LocusTrack: Integrated visualization of GWAS results and genomic annotation
por: Cuellar-Partida, Gabriel, et al.
Publicado: (2015)

Examination of clinical and environmental Vibrio parahaemolyticus isolates by multi-locus sequence typing (MLST) and multiple-locus variable-number tandem-repeat analysis (MLVA)
por: Lüdeke, Catharina H. M., et al.
Publicado: (2015)

Methodological implementation of mixed linear models in multi-locus genome-wide association studies
por: Wen, Yang-Jun, et al.
Publicado: (2017)

BAMSI: a multi-cloud service for scalable distributed filtering of massive genome data
por: Ausmees, Kristiina, et al.
Publicado: (2018)

Novel spa and Multi-Locus Sequence Types (MLST) of Staphylococcus Aureus Samples Isolated from Clinical Specimens in Korean
por: Mun, Yae Sung, et al.
Publicado: (2019)

Computing power of quantitative trait locus association mapping for haploid loci
por: Gordon, Derek, et al.
Publicado: (2009)

NetGrep: fast network schema searches in interactomes
por: Banks, Eric, et al.
Publicado: (2008)

SpectralNET – an application for spectral graph analysis and visualization
por: Forman, Joshua J, et al.
Publicado: (2005)

GatewayNet: a form of sequential rule mining
por: Kilgore, Phillip C. S. R., et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_lvid67h8ti7eso29cpebjuu7p3