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Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish

Enhancer trapping (ET) is a powerful approach to establish tissue- or cell-specific reporters and identify expression patterns of uncharacterized genes. Although a number of enhancer-trapping vectors have been developed and a large library of fish lines with distinct tissue- or cell-specific express...

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Autores principales: Liu, Chunyan, Song, Guili, Mao, Lin, Long, Yong, Li, Qing, Cui, Zongbin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4593583/
https://www.ncbi.nlm.nih.gov/pubmed/26436547
http://dx.doi.org/10.1371/journal.pone.0139612
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author Liu, Chunyan
Song, Guili
Mao, Lin
Long, Yong
Li, Qing
Cui, Zongbin
author_facet Liu, Chunyan
Song, Guili
Mao, Lin
Long, Yong
Li, Qing
Cui, Zongbin
author_sort Liu, Chunyan
collection PubMed
description Enhancer trapping (ET) is a powerful approach to establish tissue- or cell-specific reporters and identify expression patterns of uncharacterized genes. Although a number of enhancer-trapping vectors have been developed and a large library of fish lines with distinct tissue- or cell-specific expression of reporter genes have been generated, the specificity and efficiency of trapping vectors need to be improved because of the bias interaction of minimal promoters with genomic enhancers. Accordingly, we generated an enhancer-trapping vector pTME that contains a minimal mouse metallothionein gene (mMTI) promoter upstream of EGFP reporter. In the first round of screening, twelve zebrafish lines that carry a single copy of ET cassettes were characterized to have tissue- or cell-specific EGFP expression. One of the highly conserved noncoding elements near an insertion site of trapping cassettes was characterized as an enhancer that can specifically regulate the expression of EGFP in cells of the central nervous system. In addition, the pTME vector contains a mutation-cassette that is able to effectively block the transcription of an endogenous gene in an ET line with ubiquitous EGFP expression. Thus, the pTME vector can be used as an alternative tool for both enhancer trapping and mutagenesis across a target genome.
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spelling pubmed-45935832015-10-14 Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish Liu, Chunyan Song, Guili Mao, Lin Long, Yong Li, Qing Cui, Zongbin PLoS One Research Article Enhancer trapping (ET) is a powerful approach to establish tissue- or cell-specific reporters and identify expression patterns of uncharacterized genes. Although a number of enhancer-trapping vectors have been developed and a large library of fish lines with distinct tissue- or cell-specific expression of reporter genes have been generated, the specificity and efficiency of trapping vectors need to be improved because of the bias interaction of minimal promoters with genomic enhancers. Accordingly, we generated an enhancer-trapping vector pTME that contains a minimal mouse metallothionein gene (mMTI) promoter upstream of EGFP reporter. In the first round of screening, twelve zebrafish lines that carry a single copy of ET cassettes were characterized to have tissue- or cell-specific EGFP expression. One of the highly conserved noncoding elements near an insertion site of trapping cassettes was characterized as an enhancer that can specifically regulate the expression of EGFP in cells of the central nervous system. In addition, the pTME vector contains a mutation-cassette that is able to effectively block the transcription of an endogenous gene in an ET line with ubiquitous EGFP expression. Thus, the pTME vector can be used as an alternative tool for both enhancer trapping and mutagenesis across a target genome. Public Library of Science 2015-10-05 /pmc/articles/PMC4593583/ /pubmed/26436547 http://dx.doi.org/10.1371/journal.pone.0139612 Text en © 2015 Liu et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Liu, Chunyan
Song, Guili
Mao, Lin
Long, Yong
Li, Qing
Cui, Zongbin
Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title_full Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title_fullStr Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title_full_unstemmed Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title_short Generation of an Enhancer-Trapping Vector for Insertional Mutagenesis in Zebrafish
title_sort generation of an enhancer-trapping vector for insertional mutagenesis in zebrafish
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4593583/
https://www.ncbi.nlm.nih.gov/pubmed/26436547
http://dx.doi.org/10.1371/journal.pone.0139612
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