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Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network a...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596805/ https://www.ncbi.nlm.nih.gov/pubmed/26444010 http://dx.doi.org/10.1371/journal.pone.0139434 |
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author | Tax, Chantal M. W. Chamberland, Maxime van Stralen, Marijn Viergever, Max A. Whittingstall, Kevin Fortin, David Descoteaux, Maxime Leemans, Alexander |
author_facet | Tax, Chantal M. W. Chamberland, Maxime van Stralen, Marijn Viergever, Max A. Whittingstall, Kevin Fortin, David Descoteaux, Maxime Leemans, Alexander |
author_sort | Tax, Chantal M. W. |
collection | PubMed |
description | Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network as reconstructed with tractography has increased tremendously. Many pathways interdigitate and overlap, which hampers an unequivocal 3D visualization of the network and impedes an efficient study of its organization. We propose a novel fiber tractography visualization approach that interactively and selectively adapts the transparency rendering of fiber trajectories as a function of their orientation to enhance the visibility of the spatial context. More specifically, pathways that are oriented (locally or globally) along a user-specified opacity axis can be made more transparent or opaque. This substantially improves the 3D visualization of the fiber network and the exploration of tissue configurations that would otherwise be largely covered by other pathways. We present examples of fiber bundle extraction and neurosurgical planning cases where the added benefit of our new visualization scheme is demonstrated over conventional fiber visualization approaches. |
format | Online Article Text |
id | pubmed-4596805 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-45968052015-10-20 Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization Tax, Chantal M. W. Chamberland, Maxime van Stralen, Marijn Viergever, Max A. Whittingstall, Kevin Fortin, David Descoteaux, Maxime Leemans, Alexander PLoS One Research Article Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network as reconstructed with tractography has increased tremendously. Many pathways interdigitate and overlap, which hampers an unequivocal 3D visualization of the network and impedes an efficient study of its organization. We propose a novel fiber tractography visualization approach that interactively and selectively adapts the transparency rendering of fiber trajectories as a function of their orientation to enhance the visibility of the spatial context. More specifically, pathways that are oriented (locally or globally) along a user-specified opacity axis can be made more transparent or opaque. This substantially improves the 3D visualization of the fiber network and the exploration of tissue configurations that would otherwise be largely covered by other pathways. We present examples of fiber bundle extraction and neurosurgical planning cases where the added benefit of our new visualization scheme is demonstrated over conventional fiber visualization approaches. Public Library of Science 2015-10-07 /pmc/articles/PMC4596805/ /pubmed/26444010 http://dx.doi.org/10.1371/journal.pone.0139434 Text en © 2015 Tax et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Tax, Chantal M. W. Chamberland, Maxime van Stralen, Marijn Viergever, Max A. Whittingstall, Kevin Fortin, David Descoteaux, Maxime Leemans, Alexander Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title | Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title_full | Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title_fullStr | Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title_full_unstemmed | Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title_short | Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization |
title_sort | seeing more by showing less: orientation-dependent transparency rendering for fiber tractography visualization |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596805/ https://www.ncbi.nlm.nih.gov/pubmed/26444010 http://dx.doi.org/10.1371/journal.pone.0139434 |
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