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Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization

Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network a...

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Autores principales: Tax, Chantal M. W., Chamberland, Maxime, van Stralen, Marijn, Viergever, Max A., Whittingstall, Kevin, Fortin, David, Descoteaux, Maxime, Leemans, Alexander
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596805/
https://www.ncbi.nlm.nih.gov/pubmed/26444010
http://dx.doi.org/10.1371/journal.pone.0139434
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author Tax, Chantal M. W.
Chamberland, Maxime
van Stralen, Marijn
Viergever, Max A.
Whittingstall, Kevin
Fortin, David
Descoteaux, Maxime
Leemans, Alexander
author_facet Tax, Chantal M. W.
Chamberland, Maxime
van Stralen, Marijn
Viergever, Max A.
Whittingstall, Kevin
Fortin, David
Descoteaux, Maxime
Leemans, Alexander
author_sort Tax, Chantal M. W.
collection PubMed
description Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network as reconstructed with tractography has increased tremendously. Many pathways interdigitate and overlap, which hampers an unequivocal 3D visualization of the network and impedes an efficient study of its organization. We propose a novel fiber tractography visualization approach that interactively and selectively adapts the transparency rendering of fiber trajectories as a function of their orientation to enhance the visibility of the spatial context. More specifically, pathways that are oriented (locally or globally) along a user-specified opacity axis can be made more transparent or opaque. This substantially improves the 3D visualization of the fiber network and the exploration of tissue configurations that would otherwise be largely covered by other pathways. We present examples of fiber bundle extraction and neurosurgical planning cases where the added benefit of our new visualization scheme is demonstrated over conventional fiber visualization approaches.
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spelling pubmed-45968052015-10-20 Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization Tax, Chantal M. W. Chamberland, Maxime van Stralen, Marijn Viergever, Max A. Whittingstall, Kevin Fortin, David Descoteaux, Maxime Leemans, Alexander PLoS One Research Article Fiber tractography plays an important role in exploring the architectural organization of fiber trajectories, both in fundamental neuroscience and in clinical applications. With the advent of diffusion MRI (dMRI) approaches that can also model “crossing fibers”, the complexity of the fiber network as reconstructed with tractography has increased tremendously. Many pathways interdigitate and overlap, which hampers an unequivocal 3D visualization of the network and impedes an efficient study of its organization. We propose a novel fiber tractography visualization approach that interactively and selectively adapts the transparency rendering of fiber trajectories as a function of their orientation to enhance the visibility of the spatial context. More specifically, pathways that are oriented (locally or globally) along a user-specified opacity axis can be made more transparent or opaque. This substantially improves the 3D visualization of the fiber network and the exploration of tissue configurations that would otherwise be largely covered by other pathways. We present examples of fiber bundle extraction and neurosurgical planning cases where the added benefit of our new visualization scheme is demonstrated over conventional fiber visualization approaches. Public Library of Science 2015-10-07 /pmc/articles/PMC4596805/ /pubmed/26444010 http://dx.doi.org/10.1371/journal.pone.0139434 Text en © 2015 Tax et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Tax, Chantal M. W.
Chamberland, Maxime
van Stralen, Marijn
Viergever, Max A.
Whittingstall, Kevin
Fortin, David
Descoteaux, Maxime
Leemans, Alexander
Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title_full Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title_fullStr Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title_full_unstemmed Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title_short Seeing More by Showing Less: Orientation-Dependent Transparency Rendering for Fiber Tractography Visualization
title_sort seeing more by showing less: orientation-dependent transparency rendering for fiber tractography visualization
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4596805/
https://www.ncbi.nlm.nih.gov/pubmed/26444010
http://dx.doi.org/10.1371/journal.pone.0139434
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