Cargando…

Global multiple protein-protein interaction network alignment by combining pairwise network alignments

BACKGROUND: A wealth of protein interaction data has become available in recent years, creating an urgent need for powerful analysis techniques. In this context, the problem of finding biologically meaningful correspondences between different protein-protein interaction networks (PPIN) is of particu...

Descripción completa

Detalles Bibliográficos
Autores principales:	Dohrmann, Jakob, Puchin, Juris, Singh, Rahul
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4597059/ https://www.ncbi.nlm.nih.gov/pubmed/26423128 http://dx.doi.org/10.1186/1471-2105-16-S13-S11

Ejemplares similares

Scalable global alignment for multiple biological networks
por: Shih, Yu-Keng, et al.
Publicado: (2012)

Multiple genome comparison based on overlap regions of pairwise local alignments
por: Jahn, Katharina, et al.
Publicado: (2012)

Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
por: Tian, Wenhong, et al.
Publicado: (2013)

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks
por: Hashemifar, Somaye, et al.
Publicado: (2014)

Reconstruction of phyletic trees by global alignment of multiple metabolic networks
por: Ma, Cheng-Yu, et al.
Publicado: (2013)

Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks
por: Narad, Priyanka, et al.
Publicado: (2016)

GraphAlignment: Bayesian pairwise alignment of biological networks
por: Kolář, Michal, et al.
Publicado: (2012)

BinAligner: a heuristic method to align biological networks
por: Yang, Jialiang, et al.
Publicado: (2013)

Alignment-free protein interaction network comparison
por: Ali, Waqar, et al.
Publicado: (2014)

ApicoAlign: an alignment and sequence search tool for apicomplexan proteins
por: Ali, Jamshaid, et al.
Publicado: (2011)

Global alignment of protein–protein interaction networks by graph matching methods
por: Zaslavskiy, Mikhail, et al.
Publicado: (2009)

Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty
por: Agrawal, Ankit, et al.
Publicado: (2009)

Metabolic network alignment in large scale by network compression
por: Ay, Ferhat, et al.
Publicado: (2012)

Accurate multiple network alignment through context-sensitive random walk
por: Jeong, Hyundoo, et al.
Publicado: (2015)

A new graph-based method for pairwise global network alignment
por: Klau, Gunnar W
Publicado: (2009)

IsoRankN: spectral methods for global alignment of multiple protein networks
por: Liao, Chung-Shou, et al.
Publicado: (2009)

From pairwise to multiple spliced alignment
por: Jammali, Safa, et al.
Publicado: (2022)

Seed selection strategy in global network alignment without destroying the entire structures of functional modules
por: Wang, Bingbo, et al.
Publicado: (2012)

A review of protein–protein interaction network alignment: From pathway comparison to global alignment
por: Ma, Cheng-Yu, et al.
Publicado: (2020)

Optimizing a global alignment of protein interaction networks
por: Chindelevitch, Leonid, et al.
Publicado: (2013)

RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment
por: Bayegan, Amir H., et al.
Publicado: (2020)

Evaluation of multiple protein docking structures using correctly predicted pairwise subunits
por: Esquivel-Rodríguez, Juan, et al.
Publicado: (2012)

CSA: comprehensive comparison of pairwise protein structure alignments
por: Wohlers, Inken, et al.
Publicado: (2012)

Pairwise Biological Network Alignment Based on Discrete Bat Algorithm
por: Chen, Jing, et al.
Publicado: (2021)

Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
por: Sierk, Michael L, et al.
Publicado: (2010)

A fast approach to global alignment of protein-protein interaction networks
por: Kollias, Giorgos, et al.
Publicado: (2013)

Unified Alignment of Protein-Protein Interaction Networks
por: Malod-Dognin, Noël, et al.
Publicado: (2017)

Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors
por: Staritzbichler, René, et al.
Publicado: (2021)

A Method Based on Temporal Embedding for the Pairwise Alignment of Dynamic Networks
por: Cinaglia, Pietro, et al.
Publicado: (2023)

Domain-oriented edge-based alignment of protein interaction networks
por: Guo, Xin, et al.
Publicado: (2009)

Linear predictive coding representation of correlated mutation for protein sequence alignment
por: Jeong, Chan-seok, et al.
Publicado: (2010)

Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs)
por: Wang, Zhouxi, et al.
Publicado: (2013)

PROPER: global protein interaction network alignment through percolation matching
por: Kazemi, Ehsan, et al.
Publicado: (2016)

Analysis of optimal alignments unfolds aligners’ bias in existing variant profiles
por: Tran, Quang, et al.
Publicado: (2016)

A new pairwise kernel for biological network inference with support vector machines
por: Vert, Jean-Philippe, et al.
Publicado: (2007)

AligNet: alignment of protein-protein interaction networks
por: Alcalá, Adrià, et al.
Publicado: (2020)

Constructing a robust protein-protein interaction network by integrating multiple public databases
por: Martha, Venkata-Swamy, et al.
Publicado: (2011)

Improving multiple sequence alignment by using better guide trees
por: Zhan, Qing, et al.
Publicado: (2015)

Exploratory visual analysis of conserved domains on multiple sequence alignments
por: Jankun-Kelly, TJ, et al.
Publicado: (2009)

pmTM-align: scalable pairwise and multiple structure alignment with Apache Spark and OpenMP
por: Chen, Weiya, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_2rhkvvn788243hhhcoad7m2eus